CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18981	Soybean	endoplasmic reticulum, extracellular	2.61	95.0
VIT_11s0052g01780.t01	Wine grape	cytosol	73.76	77.83
VIT_11s0052g01730.t01	Wine grape	plastid	75.55	74.83
VIT_11s0052g01240.t01	Wine grape	plastid	73.76	73.46
KRH45527	Soybean	plastid	69.92	71.29
KRG99484	Soybean	plastid	69.51	70.87
KRH45528	Soybean	plastid	68.82	70.17
KRH39479	Soybean	plastid	69.09	68.9
KRH02173	Soybean	plastid	63.74	65.17
KRH11287	Soybean	peroxisome, plastid	38.32	64.58
KRH20991	Soybean	plastid	63.32	63.94
KRH50940	Soybean	plastid	63.74	63.3
KRH16140	Soybean	mitochondrion, plastid	9.48	52.67
KRH52494	Soybean	plastid	48.35	49.16
KRH61817	Soybean	plastid	48.63	49.1

Protein Annotations

KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	EntrezGene:100786607	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:9.1.2.2
EMBL:ACUP02010329	ncoils:Coil	InterPro:Dxylulose-5-P_synthase	EnsemblPlantsGene:GLYMA_17G066500	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008661	GO:GO:0009058	GO:GO:0009987
GO:GO:0016114	GO:GO:0016740	UniProt:I1MSU3	InterPro:IPR009014	EnsemblPlants:KRH02914	ProteinID:KRH02914
ProteinID:KRH02914.1	HAMAP:MF_00315	PFAM:PF02779	PFAM:PF02780	PFAM:PF13292	ScanProsite:PS00802
PANTHER:PTHR43322	PANTHER:PTHR43322:SF2	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00204	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	UniParc:UPI000233E3B8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:5132372..5136706

Molecular Weight (calculated)

78845.7 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.110

Length

728 amino acids

Sequence
(BLAST)

001: MASFVLGTTF LPLFYSHDKY SCSPSISNIT TNPQRMNQVI AAGGDNFCEE MNSTMMKKSY EPNQQLRRSL NFSGEKPSTP VLDTINYPIH MKNLSIQELE
101: ELADELREEI VYTLSKTGGH LSSSLGVAEL TVALHHVFNT PQDKIVWDVG HRTYAHKILT GRRSKMHTIR QTGGLAGFPK RDESLHDAFG VGHSSTSISA
201: SLGMAVARDL IGKDNHVISV IGDGAMTGGQ AYEAMNNAGF LDTNLIIILN DNEQVSLPTA TIDGPAPPVG ALSRALARLN TSSKFHQLRD LAKGITKQIG
301: SRAYEFTSKL DSYLRGMVGG AGACLFEELG LFYIGPVDGH DIEDLVHILK SVKGMPTLGP VLIHVITEKG KGYHPAEVAP DKMHGVVKFD PKSGKQLKSK
401: ASTRSYTQYF AESLTAEAEV DEKIVAIHAA MGGGTGLNLF QKRFPERCFD VGIAEQHAVT FAAGLAAEGL KPFCAIYSSF LQRGYDQVAH DVDLQKLPVR
501: FALDRAGLVG ADGPTHCGAF DTTFMACLPN MVVMAPSDET ELMHMIATAA AIDDRPSCFR YPRGNGIGTI LPPNNKGTPL EVGKGRVLKE GSRVALVGYG
601: TMVQSCMEAA KVLEAHGIST TVVDARFCKP LDGDLMRRLA REHEILITVE EGSIGGFGSH VSHFLGLNGL LDGNLKWRAL TLPDRYINHG SQTDQIQMAG
701: LSSNHIAVTA LSLTNVHWDS RLLLSLQI

Best Arabidopsis Sequence Match ( AT3G21500.1 )
(BLAST)

001: MSYQTQINKF SQMALSVFAF PSYINRNPSL KYLKPSSMSS TKYSKVRATT FSEKGEYYSN RPPTPLLDTI NHPMHMKNLS IKELKVLSDE LRSDVIFNVS
101: KTGGHLGSNL GVVELTVALH YIFNTPHDKI LWDVGHQSYP HKILTGRRGK MKTIRQTNGL SGYTKRRESE HDSFGTGHSS TTLSAGLGMA VGRDLKGMNN
201: SVVSVIGDGA MTAGQAYEAM NNAGYLHSNM IVILNDNKQV SLPTANLDGP TQPVGALSCA LSRLQSNCGM IRETSSTLFE ELGFHYVGPV DGHNIDDLVS
301: ILETLKSTKT IGPVLIHVVT EKGRGYPYAE RADDKYHVLK FDPETGKQFK NISKTQSYTS CFVEALIAEA EADKDIVAIH AAMGGGTMLN LFESRFPTRC
401: FDVGIAEQHA VTFAAGLACE GLKPFCTIYS SFMQRAYDQV VHDVDLQKLP VRFAIDRAGL MGADGPTHCG AFDVTFMACL PNMIVMAPSD EAELFNMVAT
501: AAAIDDRPSC FRYHRGNGIG VSLPPGNKGV PLQIGRGRIL RDGERVALLG YGSAVQRCLE AASMLSERGL KITVADARFC KPLDVALIRS LAKSHEVLIT
601: VEEGSIGGFG SHVVQFLALD GLLDGKLKVY RTWITNGSTS

Arabidopsis Description

DXPS11-deoxy-D-xylulose 5-phosphate synthase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTC7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.