Factsheet for Zm00001d002967_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002122_P007
Zm00001d017793_P001
Zm00001d026425_P003
Zm00001d043365_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30490.1	Zm00001d002122_P007	AT1G14340.1	21798944
AT4G30490.1	Zm00001d026425_P003	AT1G14340.1	21798944
AT4G30490.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT4G30490.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT4G30490.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26754	Sorghum	plastid	94.64	93.71
Zm00001d025892_P003	Maize	mitochondrion, plastid	92.26	91.36
TraesCS1A01G372400.2	Wheat	mitochondrion	80.16	80.16
HORVU1Hr1G082690.6	Barley	mitochondrion	79.96	79.64
TraesCS1B01G392400.1	Wheat	mitochondrion	79.76	78.98
TraesCS1D01G379000.4	Wheat	mitochondrion	79.76	78.98
Os08t0265500-01	Rice	mitochondrion	27.58	76.8
Bra024072.1-P	Field mustard	cytosol	55.16	70.56
GSMUA_Achr3P28020_001	Banana	mitochondrion	66.87	69.06
GSMUA_Achr1P10190_001	Banana	mitochondrion	66.87	65.82
PGSC0003DMT400029004	Potato	mitochondrion	65.48	65.61
Solyc07g006160.2.1	Tomato	mitochondrion	65.08	65.21
VIT_11s0037g00990.t01	Wine grape	mitochondrion	63.29	63.29
AT4G28070.2	Thale cress	mitochondrion	58.73	62.58
Bra026286.1-P	Field mustard	mitochondrion	58.33	62.03
CDY19007	Canola	mitochondrion	58.53	61.97
CDX89206	Canola	mitochondrion	58.53	61.97
KRH02973	Soybean	mitochondrion	61.71	61.83
AT4G30490.1	Thale cress	mitochondrion	60.52	61.37
KRH72370	Soybean	mitochondrion	60.91	61.28
CDX72246	Canola	mitochondrion	59.52	60.12
CDY39208	Canola	mitochondrion	59.72	60.08
Zm00001d034868_P002	Maize	plastid	14.09	17.53

Protein Annotations

EntrezGene:100191835	Gene3D:3.40.50.300	MapMan:35.2	InterPro:ATPase_AFG1-like	UniProt:B4FAC7	EMBL:BT034065
EMBL:BT062701	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
ProteinID:ONM15806.1	ProteinID:ONM15810.1	ProteinID:ONM15812.1	ProteinID:ONM15813.1	ProteinID:ONM15815.1	ProteinID:ONM15816.1
ProteinID:ONM15818.1	ProteinID:ONM15819.1	InterPro:P-loop_NTPase	PFAM:PF03969	PANTHER:PTHR12169	PANTHER:PTHR12169:SF6
SUPFAM:SSF52540	UniParc:UPI00017B629C	EnsemblPlantsGene:Zm00001d002967	EnsemblPlants:Zm00001d002967_P005	EnsemblPlants:Zm00001d002967_T005	SEG:seg

Description

AFG1-like ATPase family protein

Coordinates

chr2:-:28260468..28267076

Molecular Weight (calculated)

57154.7 Da

IEP (calculated)

7.742

GRAVY (calculated)

-0.304

Length

504 amino acids

Sequence
(BLAST)

001: MRSVVRSLRQ LRRFTQHHAE GHSQATRLFG QQNALIMCGS TSGSLSTLRC NGEISRFASP GVELMRSMFS TVVTDPIKDI GRGGPMVEYE RRIASGELVD
101: GDSFQVDTIQ QLQRLYEELI ENEEDCQLDR YKSSEKSGRS RWLWSRLITQ PSTYAPIKGL YLYGGVGTGK TMLMDLFYEQ LPFNWRKKRI HFHDFMLNVH
201: SRLQMHKGVS DPLDVVAAEI SDEAIILCLD EFMVTDVADA MILNRLFRQL FSKGVILVST SNRAPDKLYE GGLQRDLFLP FIDTLKERCI VHAIGSAVDY
301: RQLGSAEQGF YFVGKHYSTL LKQKLQSLIG DEKPSPQTVE VIMGRKLQVP LGANGCAYFP FEDLCDKPLG AADYFGLFKK FHTLALDGIP KLGSSNRTAA
401: YRFVTLIDVM YENKARLLCT AEAGPVGLFE NIVTVAEARK VSPRSSRSQK SDDTDLCVDN ELGFAKDRTI SRLTEINSRE YLEDFEMRLR QQQQLPLQGL
501: DKRW

Best Arabidopsis Sequence Match ( AT2G25530.1 )
(BLAST)

001: MSRTGPHRVW QIWHPSFDIS TKPTKEIYTD TNKPNQQYDK RSIFHHLNRD RKASLQRRNH NRSLKQQIMP NVSQISTVLR LAFSCKRRLS NGLHFVARSY
101: STSDPPKQPS GPLTNYSKLV EQGRLQHDPY QEKVVSAFEN LFGRLEHFEK QMEDYHVRLA EWEKKREEER RKLMVEEAEK KEDDGMWASV NKQGQKLLGR
201: WVLGRRQMNV EPGVGKWVSY LNRERKLDSI VGSRPAVPPA PKGLYIYGNV GCGKTMLMDM FYGATDGIIR HRQRFHFHEA MLKINEQMHK YWKENGAEKP
301: MQYSISSWIM NLPVDEKVKE WLAGEEFYKQ QLQMKHILPA VADKFLVDQQ SSKKGASILC FDEIQTVDVF AIVALSGIMS RLLTTGTVLV ATSNRAPREL
401: NQDGMQKEIF DKFISKLEKH CEIISIGSEV DYRRVAAKNS AENVHYLWPL NDAVLEEFEK MWRQVTDQYG GEITSATLPV MFGRTVEVPE SCSGVARFTF
501: EYLCGRPVGA ADYIAVAKNY HTIFISDIPA MSMEIRDKAR RFITLVDELY NHHCCLVSSA ETAIDELFQG TAEGTLFDLE SFQFETETED SRLRRDVLAE
601: GSISAAGSPS SIVSMLSGEE EMFAFARAAS RLIEMQTPLY LEGVRFLHPY FHQQK

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKJ6]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.