CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11525	Canola	mitochondrion	98.29	98.29
Bra007794.1-P	Field mustard	mitochondrion	98.12	98.12
AT2G25530.1	Thale cress	cytosol, nucleus, vacuole	89.9	80.15
PGSC0003DMT400052752	Potato	cytosol	50.68	63.79
VIT_04s0008g05270.t01	Wine grape	mitochondrion	65.58	63.31
Solyc06g066090.2.1	Tomato	mitochondrion	64.04	62.96
KRH05135	Soybean	mitochondrion	62.67	61.72
GSMUA_AchrUn_...	Banana	cytosol	22.95	59.56
GSMUA_AchrUn_...	Banana	nucleus	16.44	58.18
TraesCS3A01G054200.1	Wheat	mitochondrion	60.1	57.92
TraesCS3D01G053700.1	Wheat	mitochondrion	60.27	57.89
Os03t0851900-01	Rice	plasma membrane	59.93	57.1
EER90502	Sorghum	mitochondrion	59.59	56.4
HORVU3Hr1G010290.1	Barley	cytosol, mitochondrion	60.1	55.8
GSMUA_AchrUn_...	Banana	plastid	16.27	40.25
Zm00001d034868_P002	Maize	plastid	26.54	38.27
CDY19007	Canola	mitochondrion	23.12	28.36
CDX89206	Canola	mitochondrion	23.12	28.36
CDY39208	Canola	mitochondrion	23.63	27.54
CDX72246	Canola	mitochondrion	23.29	27.25

Protein Annotations

EnsemblPlants:CDX76756	EnsemblPlantsGene:GSBRNA2T00127248001	Gene3D:3.40.50.300	GO:A0A078CHP6	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AFG1-like	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR12169
PANTHER:PTHR12169:SF5	PFAM:PF03969	ProteinID:CDX76756	ProteinID:CDX76756.1	SEG:seg	SUPFAM:SSF52540
UniParc:UPI0004EE325B	MapMan:35.2	:	:	:	:

Description

BnaC08g33420D

Coordinates

chrLK031808:-:870752..873527

Molecular Weight (calculated)

67036.2 Da

IEP (calculated)

6.760

GRAVY (calculated)

-0.441

Length

584 amino acids

Sequence
(BLAST)

001: MRKVSQISAV LRLAFSSSRR SRHTNGCRSY CTPPNPTPSG PLTSYSNLVE QGRLQHDPYQ EKVASAFQNL FGRLEHFEKE MEDYHVRLEE WEKKREEERR
101: RLMVEEAEKK EEDGVWASMN KQGQKLLGRW VLGRRQMNVE PGVGKWVSYL NRERKLDSIV GSRPAIPSAP KGLYIYGNVG CGKTMLMDMF YSATDGMIRH
201: RQRFHFHEAM LKINEQMHKY WKENGEEKSS QYSVSSWIMN LPVDERVKEW LAGEEFYKQQ LQMKHILPAV ADKFLVDQQS IKKGASILCF DEIQTVDVFA
301: IVALSGIMSR LLTTGTVLVA TSNRAPRELN QDGMQKEIFD KFISKLEKHC EIISIGSEVD YRRVAAKNSV EHVHYLWPLN DGVLEEFEKM WRQVTDQYGG
401: EITSATLPVM FGRTVEVPES CKGVARFTFE YLCGRPVGAA DYIAVAKNYH TIFISEIPAM SMEIRDKARR FITLVDELYN HHCCLVSSAE TPIDELFQGT
501: AEGTLFDLES FQFETETEDS RLRRDVLAEG SISAAGSPSS IVKMLSGEEE MFAFARAASR LIEMQTPLYL EGVRFLHPYF HQPK

Best Arabidopsis Sequence Match ( AT2G25530.1 )
(BLAST)

001: MSRTGPHRVW QIWHPSFDIS TKPTKEIYTD TNKPNQQYDK RSIFHHLNRD RKASLQRRNH NRSLKQQIMP NVSQISTVLR LAFSCKRRLS NGLHFVARSY
101: STSDPPKQPS GPLTNYSKLV EQGRLQHDPY QEKVVSAFEN LFGRLEHFEK QMEDYHVRLA EWEKKREEER RKLMVEEAEK KEDDGMWASV NKQGQKLLGR
201: WVLGRRQMNV EPGVGKWVSY LNRERKLDSI VGSRPAVPPA PKGLYIYGNV GCGKTMLMDM FYGATDGIIR HRQRFHFHEA MLKINEQMHK YWKENGAEKP
301: MQYSISSWIM NLPVDEKVKE WLAGEEFYKQ QLQMKHILPA VADKFLVDQQ SSKKGASILC FDEIQTVDVF AIVALSGIMS RLLTTGTVLV ATSNRAPREL
401: NQDGMQKEIF DKFISKLEKH CEIISIGSEV DYRRVAAKNS AENVHYLWPL NDAVLEEFEK MWRQVTDQYG GEITSATLPV MFGRTVEVPE SCSGVARFTF
501: EYLCGRPVGA ADYIAVAKNY HTIFISDIPA MSMEIRDKAR RFITLVDELY NHHCCLVSSA ETAIDELFQG TAEGTLFDLE SFQFETETED SRLRRDVLAE
601: GSISAAGSPS SIVSMLSGEE EMFAFARAAS RLIEMQTPLY LEGVRFLHPY FHQQK

Arabidopsis Description

AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKJ6]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.