Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76756 | Canola | mitochondrion | 80.15 | 89.9 |
| Bra007794.1-P | Field mustard | mitochondrion | 79.54 | 89.21 |
| CDY11525 | Canola | mitochondrion | 78.93 | 88.53 |
| PGSC0003DMT400052752 | Potato | cytosol | 45.95 | 64.87 |
| Solyc06g066090.2.1 | Tomato | mitochondrion | 57.56 | 63.47 |
| VIT_04s0008g05270.t01 | Wine grape | mitochondrion | 57.86 | 62.64 |
| KRH05135 | Soybean | mitochondrion | 56.03 | 61.89 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.76 | 60.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.66 | 58.18 |
| TraesCS3D01G053700.1 | Wheat | mitochondrion | 53.44 | 57.57 |
| TraesCS3A01G054200.1 | Wheat | mitochondrion | 53.13 | 57.43 |
| EER90502 | Sorghum | mitochondrion | 53.74 | 57.05 |
| Os03t0851900-01 | Rice | plasma membrane | 53.13 | 56.77 |
| HORVU3Hr1G010290.1 | Barley | cytosol, mitochondrion | 53.59 | 55.8 |
| GSMUA_AchrUn_... | Banana | plastid | 14.66 | 40.68 |
| Zm00001d034868_P002 | Maize | plastid | 23.36 | 37.78 |
| AT4G28070.2 | Thale cress | mitochondrion | 20.46 | 28.33 |
| AT4G30490.1 | Thale cress | mitochondrion | 20.92 | 27.57 |
Protein Annotations
| MapMan:35.2 | EntrezGene:817091 | ProteinID:AAD20712.1 | ProteinID:AEC07713.1 | ProteinID:ANM62570.1 | ArrayExpress:AT2G25530 |
| EnsemblPlantsGene:AT2G25530 | RefSeq:AT2G25530 | TAIR:AT2G25530 | RefSeq:AT2G25530-TAIR-G | EnsemblPlants:AT2G25530.1 | TAIR:AT2G25530.1 |
| InterPro:ATPase_AFG1-like | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| RefSeq:NP_001324719.1 | RefSeq:NP_180123.1 | InterPro:P-loop_NTPase | PFAM:PF03969 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR12169 | PANTHER:PTHR12169:SF5 | UniProt:Q9SKJ6 | SUPFAM:SSF52540 | UniParc:UPI00000A3789 | SEG:seg |
Description
AFG1-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKJ6]
Coordinates
chr2:+:10863059..10866910
Molecular Weight (calculated)
75415.2 Da
IEP (calculated)
8.050
GRAVY (calculated)
-0.508
Length
655 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRTGPHRVW QIWHPSFDIS TKPTKEIYTD TNKPNQQYDK RSIFHHLNRD RKASLQRRNH NRSLKQQIMP NVSQISTVLR LAFSCKRRLS NGLHFVARSY
101: STSDPPKQPS GPLTNYSKLV EQGRLQHDPY QEKVVSAFEN LFGRLEHFEK QMEDYHVRLA EWEKKREEER RKLMVEEAEK KEDDGMWASV NKQGQKLLGR
201: WVLGRRQMNV EPGVGKWVSY LNRERKLDSI VGSRPAVPPA PKGLYIYGNV GCGKTMLMDM FYGATDGIIR HRQRFHFHEA MLKINEQMHK YWKENGAEKP
301: MQYSISSWIM NLPVDEKVKE WLAGEEFYKQ QLQMKHILPA VADKFLVDQQ SSKKGASILC FDEIQTVDVF AIVALSGIMS RLLTTGTVLV ATSNRAPREL
401: NQDGMQKEIF DKFISKLEKH CEIISIGSEV DYRRVAAKNS AENVHYLWPL NDAVLEEFEK MWRQVTDQYG GEITSATLPV MFGRTVEVPE SCSGVARFTF
501: EYLCGRPVGA ADYIAVAKNY HTIFISDIPA MSMEIRDKAR RFITLVDELY NHHCCLVSSA ETAIDELFQG TAEGTLFDLE SFQFETETED SRLRRDVLAE
601: GSISAAGSPS SIVSMLSGEE EMFAFARAAS RLIEMQTPLY LEGVRFLHPY FHQQK
101: STSDPPKQPS GPLTNYSKLV EQGRLQHDPY QEKVVSAFEN LFGRLEHFEK QMEDYHVRLA EWEKKREEER RKLMVEEAEK KEDDGMWASV NKQGQKLLGR
201: WVLGRRQMNV EPGVGKWVSY LNRERKLDSI VGSRPAVPPA PKGLYIYGNV GCGKTMLMDM FYGATDGIIR HRQRFHFHEA MLKINEQMHK YWKENGAEKP
301: MQYSISSWIM NLPVDEKVKE WLAGEEFYKQ QLQMKHILPA VADKFLVDQQ SSKKGASILC FDEIQTVDVF AIVALSGIMS RLLTTGTVLV ATSNRAPREL
401: NQDGMQKEIF DKFISKLEKH CEIISIGSEV DYRRVAAKNS AENVHYLWPL NDAVLEEFEK MWRQVTDQYG GEITSATLPV MFGRTVEVPE SCSGVARFTF
501: EYLCGRPVGA ADYIAVAKNY HTIFISDIPA MSMEIRDKAR RFITLVDELY NHHCCLVSSA ETAIDELFQG TAEGTLFDLE SFQFETETED SRLRRDVLAE
601: GSISAAGSPS SIVSMLSGEE EMFAFARAAS RLIEMQTPLY LEGVRFLHPY FHQQK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.