CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78524	Canola	nucleus	97.93	92.22
Bra006202.1-P	Field mustard	nucleus	96.66	91.84
CDX91118	Canola	nucleus	92.21	90.06
CDX85646	Canola	nucleus	92.05	89.49
AT5G13480.2	Thale cress	nucleus	88.71	84.93
CDY01533	Canola	plastid	18.92	75.32
Solyc08g067040.2.1	Tomato	nucleus	70.75	58.25
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	19.08	42.4
CDX86957	Canola	cytosol	12.24	24.68
CDX91316	Canola	cytosol	12.56	24.23
CDX97287	Canola	cytosol	12.4	23.93
CDY00226	Canola	cytosol, nucleus, plastid	11.76	23.49
CDY54233	Canola	golgi	6.84	23.12
CDY08856	Canola	cytosol	9.54	20.2
CDX72090	Canola	mitochondrion	10.65	20.06
CDX67810	Canola	cytosol	11.45	20.06
CDX84544	Canola	cytosol	9.54	20.0
CDX70436	Canola	plastid	5.25	19.76
CDY52843	Canola	nucleus	6.52	17.67
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	8.9	17.55
CDX68298	Canola	cytosol	10.65	17.22
CDY36678	Canola	cytosol	10.49	16.97
CDX96351	Canola	cytosol	10.65	16.79
CDY09645	Canola	cytosol	12.56	16.7
CDX72834	Canola	cytosol	10.49	16.58
CDX98931	Canola	nucleus	12.56	16.46
CDX70097	Canola	cytosol	11.92	16.23
CDX96156	Canola	cytosol	12.24	16.18
CDY27046	Canola	cytosol	12.24	16.18
CDX84790	Canola	cytosol	12.24	16.18
CDX77842	Canola	cytosol, nucleus, peroxisome	2.54	16.16
CDX79802	Canola	cytosol, golgi	10.65	16.14
CDY17912	Canola	cytosol, golgi	10.65	16.07
CDX98392	Canola	endoplasmic reticulum, extracellular	11.13	15.8
CDY08014	Canola	mitochondrion	2.54	15.69
CDY34965	Canola	cytosol	11.45	15.32
CDX90556	Canola	cytosol	11.61	15.18
CDY09730	Canola	cytosol	11.61	15.18
CDY28352	Canola	cytosol	11.45	15.09
CDY27174	Canola	cytosol	3.66	15.03
CDY44171	Canola	cytosol	3.5	14.19
CDY05801	Canola	cytosol	11.29	14.14
CDY05802	Canola	mitochondrion	11.13	12.17
CDY34658	Canola	mitochondrion	14.15	11.62
CDY60225	Canola	cytosol	14.47	10.9
CDX81101	Canola	cytosol	14.47	10.82
CDX88026	Canola	cytosol	14.15	10.74
CDX80363	Canola	cytosol	13.83	10.24
CDY34846	Canola	nucleus	14.31	9.87
CDY52222	Canola	cytosol	13.2	7.4
CDY15006	Canola	cytosol	11.92	7.4
CDY03812	Canola	cytosol	13.2	7.39
CDY69403	Canola	nucleus	0.64	2.16

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX70506	ProteinID:CDX70506	ProteinID:CDX70506.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00140335001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEF17E
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaC03g05900D

Coordinates

chrLK031791:-:776673..781287

Molecular Weight (calculated)

70135.8 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.756

Length

629 amino acids

Sequence
(BLAST)

001: MMRHPSASST NLNPDYHHPS APNPFDSHVD SFGAKRMRKH TQRKAVDYTS TVVRYIQART WQRDSRDVTS LQPTPAAAVD MLPPVAYSDN PSTSFAAKFV
101: HSSLNKNRCS INCVLWTPSG RRLITGSQSG EFTLWNGQSF NFEMILQAHD QPIRSMVWSH NDIWMVSGDD GGTLKYWQSN MNNVKANRTA HKESIRDLSF
201: CKTDLKFCSC SDDTTVKVWD FTKCQEEITL TGHGWDVKCV DWHPTKSLLV SGGKDQLVKI WDARTARELC SLHGHKNMVL SVKWNQNGNL LLTASKDQII
301: KLYDIRTMKE LESFRGHTKD VTSLAWHPSH EEYFVSGSLD GSICHWIVGH ENPQIEISNA HDNSVWDLAW HPIGYLLSSG SNDHTTKFWC RNRPGDNPRD
401: ALTMQNQGYN DQGFGNRMLD NFQPSEASPT PGAFVPGLTR KEGTIPGIGI AMPFDASSQG EHKQPLPGGM APPLPPGPHP SLIGSGQQQG YQQQHHHHQG
501: HPQQIPPMPN MPHLQRPPSS HMPLHAHHPR PMQMPPHGHM PPSSMPMPHQ IPGPMGMQGG MNPQMSQGHY MGPASGAFQG PPTSGGPMYP QGRGFNRPQM
601: MPGYNNPFQQ QPQPPLPGGP PPNTNQQHQ

Best Arabidopsis Sequence Match ( AT5G13480.3 )
(BLAST)

001: MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ ARTWQRDSRD RTTLQPTPAA AVDMLPTVAY SDNPSTSFAA
101: KFVHASLNKN RCSINRVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNENYMVS GDDGGTLKYW QNNMNNVKAN KTAHKESIRD
201: LSFCKTDLKF CSCSDDTTVK VWDFTKCVDE SSLTGHGWDV KSVDWHPTKS LLVSGGKDQL VKLWDTRSGR ELCSLHGHKN IVLSVKWNQN GNWLLTASKD
301: QIIKLYDIRT MKELQSFRGH TKDVTSLAWH PCHEEYFVSG SSDGSICHWI VGHENPQIEI PNAHDNSVWD LAWHPIGYLL CSGSNDHTTK FWCRNRPADN
401: PRDVLMQNQG YNEQGFGRQP DNFQPSEASP IPGAFVPGLT RNEGTIPGIG IAMPFDASSQ GDHKQPLPGS MALGAPPLPP GPHPSLLGSG QQQGYQQQQQ
501: HQGHPQQMLP MPNMPHHQLP PSSHMPLHPH HLPRPMQMPP HGHMPPPSMP MSHQMPGSMG MQGGMNPQMS QSHFMGAPSG VFQGQPNSGG PQMYPQGRGG
601: FNRPQMIPGY NNPFQQVPFK H

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.