Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G056700.1 | Wheat | nucleus | 86.04 | 85.55 |
| TraesCS2A01G058000.1 | Wheat | nucleus | 79.49 | 80.87 |
| HORVU2Hr1G012100.2 | Barley | nucleus | 70.94 | 68.78 |
| Zm00001d019596_P001 | Maize | nucleus | 50.43 | 50.72 |
| Os07t0461500-00 | Rice | cytosol | 52.42 | 50.69 |
| OQU88983 | Sorghum | nucleus | 46.15 | 49.69 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 37.89 | 42.9 |
Protein Annotations
| MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | InterPro:EF_Hand_1_Ca_BS | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 |
| ScanProsite:PS00018 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF8 | EnsemblPlantsGene:TraesCS2B01G073000 | EnsemblPlants:TraesCS2B01G073000.1 | SEG:seg |
Description
No Description!
Coordinates
chr2B:-:39179171..39180447
Molecular Weight (calculated)
38190.1 Da
IEP (calculated)
9.854
GRAVY (calculated)
-0.954
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFDSVAAI AGDDEALAHS PFGISDGYNA EGSRGHGMHR GHRFATSYSS FGTALSEDDL VGIAGEGFGS GYGAYTMAPD SNGSGYIGVE EVLMGSLLQG
101: GIGGSIDDDL FVRAVDDRAV LPPPEAMRDE GTLRREWRRQ NRLRLEEKER KERERRAEII AEAEEFKKSF LEKRKLNCQR RRTHNRDKEK VFMANQEKFH
201: KEADQQYWRA IAELVPHEIP GLEKRGAAGR KKELEKKPNI VVVQGPKPGK PTDLSRMRQA LAKLKQNPPA HMVPTPPPEA KEEKKDGDKD AKKDGGKGPK
301: QAEEKKDGKK VAGEGEKKAT TGVGKAATGG GNAAAAAPPA DKAPKQPATK K
101: GIGGSIDDDL FVRAVDDRAV LPPPEAMRDE GTLRREWRRQ NRLRLEEKER KERERRAEII AEAEEFKKSF LEKRKLNCQR RRTHNRDKEK VFMANQEKFH
201: KEADQQYWRA IAELVPHEIP GLEKRGAAGR KKELEKKPNI VVVQGPKPGK PTDLSRMRQA LAKLKQNPPA HMVPTPPPEA KEEKKDGDKD AKKDGGKGPK
301: QAEEKKDGKK VAGEGEKKAT TGVGKAATGG GNAAAAAPPA DKAPKQPATK K
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.