Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G056700.1 | Wheat | nucleus | 82.61 | 80.74 |
| TraesCS2B01G073000.1 | Wheat | nucleus | 80.87 | 79.49 |
| HORVU2Hr1G012100.2 | Barley | nucleus | 70.72 | 67.4 |
| Os07t0461500-00 | Rice | cytosol | 51.88 | 49.31 |
| Zm00001d019596_P001 | Maize | nucleus | 47.83 | 47.28 |
| OQU88983 | Sorghum | nucleus | 44.06 | 46.63 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 36.81 | 40.84 |
Protein Annotations
| MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | ncoils:Coil | InterPro:EF_Hand_1_Ca_BS | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 |
| GO:GO:0030132 | PFAM:PF01086 | ScanProsite:PS00018 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF8 | EnsemblPlantsGene:TraesCS2A01G058000 |
| EnsemblPlants:TraesCS2A01G058000.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:24312753..24314021
Molecular Weight (calculated)
37258.8 Da
IEP (calculated)
9.225
GRAVY (calculated)
-0.892
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFDSVAAI AGDDEALTHS PFGISDGYNA EGSRGHGMHR GHRFATSYSS FGTALSEDDL AGIAGEGFGG GYGAYSMAPD SNGSGYIGVE EVLMGSLLQG
101: GIGGSMDDDL FVRAADDGAV LPPPEAMREE GLLRREWRRQ NKLRLEEKER KERERRGEII AEAEEFKKSF LERRKLNCQT RRTHNRDREK VFMANQEKFH
201: KEAGQQYWRA IAELVPHEIP GLEKRGAAAR KKEPNIVVVQ GPKRGKPTDL SRMRQALARL KQNPPPHMVP PAAKEENKDG DKDGKKDGGK GPKQVEEKKD
301: GKRAAGEGEK KAAACDGGKA AAGGGNVAAG APPAEKAAEQ LAAKK
101: GIGGSMDDDL FVRAADDGAV LPPPEAMREE GLLRREWRRQ NKLRLEEKER KERERRGEII AEAEEFKKSF LERRKLNCQT RRTHNRDREK VFMANQEKFH
201: KEAGQQYWRA IAELVPHEIP GLEKRGAAAR KKEPNIVVVQ GPKRGKPTDL SRMRQALARL KQNPPPHMVP PAAKEENKDG DKDGKKDGGK GPKQVEEKKD
301: GKRAAGEGEK KAAACDGGKA AAGGGNVAAG APPAEKAAEQ LAAKK
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.