Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019596_P001 | Maize | nucleus | 53.17 | 55.3 |
| TraesCS2B01G073000.1 | Wheat | nucleus | 50.69 | 52.42 |
| TraesCS2A01G058000.1 | Wheat | nucleus | 49.31 | 51.88 |
| TraesCS2D01G056700.1 | Wheat | nucleus | 50.41 | 51.84 |
| HORVU2Hr1G012100.2 | Barley | nucleus | 51.52 | 51.66 |
| OQU88983 | Sorghum | nucleus | 42.98 | 47.85 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 36.91 | 46.05 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 35.81 | 43.19 |
Protein Annotations
| MapMan:22.1.1.2 | EntrezGene:9267670 | ProteinID:BAC84161.1 | ProteinID:BAH93917.1 | ProteinID:BAT01366.1 | InterPro:Clathrin_L-chain |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030125 |
| GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032050 | GO:GO:0072583 |
| EnsemblPlantsGene:Os07g0461500 | EnsemblPlants:Os07t0461500-00 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF7 | UniProt:Q6Z3A8 |
| UniParc:UPI00001BF5BD | RefSeq:XP_015645976.1 | SEG:seg | : | : | : |
Description
OsSTA194Clathrin light chain family protein. (Os07t0461500-00)
Coordinates
chr7:-:16192184..16193520
Molecular Weight (calculated)
37774.8 Da
IEP (calculated)
4.899
GRAVY (calculated)
-0.767
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFDSVAAV AGDGDADDDD VLPPAPFDPA ADGAQGGLGA LRRGHRFATS YSSFGTAASE DDLAGAGAGT DGGVGAGIPL GSSSNGGAAY GYGGSGDVMN
101: GHVDQIGDVM GGGVVVGDGG GIDDDLFAGA GDGDDGPVLP PPEAMKEEGI LRREWRRQNA LMLEEKERKE RERRGEIIAE ADEFKRSFAE KRKLNGDTNR
201: AQNRDREKLF LAKQEKFHGE AEKQYWKAIA EMVPHEIPGL EKRGKRREKQ SAEANAKAKQ PGVVVVQGTK PGKPTDLSRM RQVLMKLKQT PPPHMAPPPP
301: QPAKDTGGDT DANKDGEAEK AAGEIEKKAA GGEKEAAAGP PVTAAAAADA QANKAAAEET AKK
101: GHVDQIGDVM GGGVVVGDGG GIDDDLFAGA GDGDDGPVLP PPEAMKEEGI LRREWRRQNA LMLEEKERKE RERRGEIIAE ADEFKRSFAE KRKLNGDTNR
201: AQNRDREKLF LAKQEKFHGE AEKQYWKAIA EMVPHEIPGL EKRGKRREKQ SAEANAKAKQ PGVVVVQGTK PGKPTDLSRM RQVLMKLKQT PPPHMAPPPP
301: QPAKDTGGDT DANKDGEAEK AAGEIEKKAA GGEKEAAAGP PVTAAAAADA QANKAAAEET AKK
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Arabidopsis Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.