Factsheet for HORVU5Hr1G048700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 15918880

gfp PMID: 15918880 doi

I Diaz, M Martinez, I Isabel-LaMoneda, I Rubio-Somoza, P Carbonero

Laboratorio de Bioquímica y Biología Molecular, Departamento de Biotecnología-UPM, E.T.S. Ingenieros Agrónomos, Ciudad Universitaria s/n, 28040 Madrid, Spain.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G155900.1	Wheat	nucleus	85.59	84.32
TraesCS5B01G154100.1	Wheat	nucleus	84.08	82.84
TraesCS5D01G161000.1	Wheat	nucleus	84.38	82.16
Os02t0252400-01	Rice	nucleus	43.84	39.14
GSMUA_Achr6P19530_001	Banana	nucleus	15.62	21.05
HORVU2Hr1G013060.1	Barley	nucleus, plastid	18.02	20.13
HORVU7Hr1G043250.2	Barley	nucleus	16.82	19.72
HORVU6Hr1G065250.3	Barley	nucleus	27.03	19.15
HORVU5Hr1G097600.1	Barley	nucleus, plastid	13.21	18.97
HORVU5Hr1G113190.2	Barley	nucleus, plastid	15.92	18.53
HORVU3Hr1G083460.1	Barley	nucleus	18.02	18.13
HORVU5Hr1G021290.1	Barley	nucleus	18.32	17.68
HORVU3Hr1G116260.1	Barley	nucleus	16.52	17.46
HORVU1Hr1G074140.1	Barley	nucleus, vacuole	18.02	17.44
HORVU3Hr1G116270.2	Barley	nucleus	16.22	15.52
HORVU1Hr1G005390.2	Barley	nucleus	16.82	15.34
HORVU5Hr1G097620.1	Barley	nucleus	17.42	15.03
HORVU3Hr1G116220.1	Barley	nucleus, plastid	16.22	13.6
HORVU2Hr1G095390.1	Barley	cytosol, mitochondrion, nucleus	9.01	13.57
HORVU5Hr1G113220.6	Barley	nucleus	17.42	12.89
HORVU2Hr1G047750.4	Barley	plastid	3.3	4.87

Protein Annotations

MapMan:15.5.1.5	UniProt:A0A287R438	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G048700	EnsemblPlants:HORVU5Hr1G048700.1
InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992
UniParc:UPI000B462AB6	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:377119686..377122081

Molecular Weight (calculated)

34105.5 Da

IEP (calculated)

8.001

GRAVY (calculated)

-0.570

Length

333 amino acids

Sequence
(BLAST)

001: MEEVFSSNSK SKAGQMAGEA VAAAEKKSRP KPEQKVECPR CKSGNTKFCY YNNYSMSQPR YFCKACRRYW THGGSLRNVP IGGGCRKPKR PGTSDAHKLG
101: MASSSEPTGV VPPSNCTGMN FANVLPTFMS GGFDIQSSLS LTTFGSSSSS NPTGLMSPGG TTSFLDVLRG GAGGLLDGSL GPNNGYYYGG HANGSGIGML
201: MTPPTVSFGI PSPMQQHGGL VVGGNGIGGT TSSTFQGNAG EEGDDGTGSI MGLQWQPHVG NGGGGGVGLG GAHHLGTGNN VTMGNNNNNN NQNNNNGGGA
301: GDDDDGGSSR DCYWINNGGS NPWQSLLNST SLM

Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)

001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM

Arabidopsis Description

DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.