Factsheet for HORVU6Hr1G065250.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 15918880

gfp PMID: 15918880 doi

I Diaz, M Martinez, I Isabel-LaMoneda, I Rubio-Somoza, P Carbonero

Laboratorio de Bioquímica y Biología Molecular, Departamento de Biotecnología-UPM, E.T.S. Ingenieros Agrónomos, Ciudad Universitaria s/n, 28040 Madrid, Spain.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G255500.1	Wheat	nucleus	78.94	94.64
TraesCS6D01G236700.1	Wheat	nucleus	78.3	94.12
TraesCS6B01G270100.1	Wheat	nucleus	77.45	93.57
HORVU2Hr1G095390.1	Barley	cytosol, mitochondrion, nucleus	25.53	54.3
GSMUA_Achr5P19980_001	Banana	nucleus	27.87	49.25
AT3G61850.4	Thale cress	nucleus	27.02	39.2
CDX71704	Canola	nucleus	26.81	37.61
Bra014418.1-P	Field mustard	nucleus	24.68	37.42
CDX86775	Canola	nucleus	24.68	37.3
CDY64622	Canola	nucleus	25.32	36.84
CDY57876	Canola	nucleus	27.66	36.01
CDX95706	Canola	nucleus	27.87	35.5
Bra000429.1-P	Field mustard	nucleus	27.87	35.5
AT2G46590.2	Thale cress	nucleus	27.66	35.23
CDX83357	Canola	nucleus	27.87	35.03
CDX80030	Canola	nucleus	27.02	34.89
CDX89134	Canola	extracellular, vacuole	25.74	34.77
Bra004525.1-P	Field mustard	nucleus	25.96	34.66
CDY41539	Canola	nucleus	26.6	34.15
CDY61727	Canola	nucleus	26.81	33.69
Bra039272.1-P	Field mustard	nucleus, plastid	25.74	33.61
CDY27314	Canola	nucleus	25.74	33.61
HORVU5Hr1G048700.1	Barley	nucleus	19.15	27.03
HORVU5Hr1G021290.1	Barley	nucleus	17.87	24.35
HORVU5Hr1G097600.1	Barley	nucleus, plastid	11.91	24.14
HORVU7Hr1G043250.2	Barley	nucleus	14.47	23.94
HORVU3Hr1G083460.1	Barley	nucleus	16.6	23.57
HORVU2Hr1G013060.1	Barley	nucleus, plastid	14.47	22.82
HORVU1Hr1G074140.1	Barley	nucleus, vacuole	16.38	22.38
HORVU5Hr1G113190.2	Barley	nucleus, plastid	13.62	22.38
HORVU3Hr1G116260.1	Barley	nucleus	14.26	21.27
HORVU5Hr1G113220.6	Barley	nucleus	20.0	20.89
HORVU3Hr1G116270.2	Barley	nucleus	14.26	19.25
HORVU5Hr1G097620.1	Barley	nucleus	15.53	18.91
HORVU1Hr1G005390.2	Barley	nucleus	14.68	18.9
HORVU3Hr1G116220.1	Barley	nucleus, plastid	14.04	16.62
HORVU2Hr1G047750.4	Barley	plastid	4.47	9.29

Protein Annotations

MapMan:15.5.1.5	EMBL:AK363473	UniProt:F2DHV5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G065250
EnsemblPlants:HORVU6Hr1G065250.3	InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF28	UniParc:UPI000200640F	InterPro:Znf_Dof	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DHV5]

Coordinates

chrchr6H:-:446935182..446938734

Molecular Weight (calculated)

49229.4 Da

IEP (calculated)

8.733

GRAVY (calculated)

-0.676

Length

470 amino acids

Sequence
(BLAST)

001: MTYGGERRGS NPTTVIHKTF LPLPLFRVLE TTSSSCSSPS FPRPSFSPPV HSAAGEDFRR RAREAIGIDP WMDAAQWHQG LGLVKPMEEM IMAGNPNPNP
101: NGNPSPQPAP PSGAEAQRAP LPGQPAAGAG AAAGTGSTER KAARPQKEKA INCPRCNSTN TKFCYYNNYS LQQPRYFCKT CRRYWTEGGS LRNVPVGGGS
201: RKNKRSSSSV VSSAAGAVST SGAASGTVPV GGMPAKNPKL MHEGAHDLNL AFPHHHGRVL HPSEFAAFPS LESSSVCNPG GAMAANGVGG GRGMGTFSAM
301: ELLRSTGCYV PLPQVQLGMP PEYAAAGFAL GEFRMPLQHQ QQHHQQQQQQ QQQHHQHQHQ QHQQQQQQQQ VQNMLGFSLD TGGGGDGGGY GGGLQGAQES
401: ATGRMLFPFE DLKPGANAAG GGGASGGDQF EHSKEQGGGG GHETLGFWNN SMIGNGSSND AGGGGGGGSW

Best Arabidopsis Sequence Match ( AT3G61850.4 )
(BLAST)

001: MDATKWTQGF QEMINVKPME QMISSTNNNT PQQQPTFIAT NTRPNATASN GGSGGNTNNT ATMETRKARP QEKVNCPRCN STNTKFCYYN NYSLTQPRYF
101: CKGCRRYWTE GGSLRNVPVG GSSRKNKRSS TPLASPSNPK LPDLNPPILF SSQIPNKSNK DLNLLSFPVM QDHHHHGMSH FFHMPKIENN NTSSSIYASS
201: SPVSALELLR SNGVSSRGMN TFLPGQMMDS NSVLYSSLGF PTMPDYKQSN NNLSFSIDHH QGIGHNTINS NQRAQDNNDD MNGASRVLFP FSDMKELSST
301: TQEKSHGNNT YWNGMFSNTG GSSW

Arabidopsis Description

DAG1Dof-type zinc finger DNA-binding family protein [Source:UniProtKB/TrEMBL;Acc:B3H6D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.