CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01754
CDY28576
CDY28577
CDY68276

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52695.1	CDY01754	AT1G69690.1	21798944
AT1G52695.1	CDY28576	AT1G69690.1	21798944
AT1G52695.1	CDY28577	AT1G69690.1	21798944
AT1G52695.1	CDY68276	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018982.1-P	Field mustard	cytosol	36.41	100.0
AT1G52695.1	Thale cress	cytoskeleton, cytosol, plastid	65.05	58.01
CDY58459	Canola	plastid	43.2	34.9
CDX97691	Canola	plastid	43.2	34.9
CDY30093	Canola	plastid	42.72	34.51
CDY08787	Canola	cytosol, plasma membrane, plastid	39.81	34.31
CDY60557	Canola	plastid	42.23	34.12
CDY02538	Canola	mitochondrion	42.23	34.12
CDY21856	Canola	plastid	41.75	33.73
CDY20140	Canola	mitochondrion, plastid	41.75	33.73
CDY72010	Canola	mitochondrion	32.04	33.17
CDY14573	Canola	cytosol, extracellular, plasma membrane	40.78	32.68
CDX75839	Canola	plasma membrane	42.23	32.46
CDY62011	Canola	endoplasmic reticulum, plasma membrane	41.75	29.35
CDX87910	Canola	extracellular	35.92	27.72
CDY49908	Canola	cytosol	30.1	27.68
CDX94091	Canola	mitochondrion	20.87	17.92
CDX94090	Canola	extracellular, vacuole	21.84	17.18
CDY28985	Canola	extracellular	5.83	11.21
CDX98742	Canola	mitochondrion, vacuole	21.84	9.0

Protein Annotations

EnsemblPlants:CDY68953	EnsemblPlantsGene:GSBRNA2T00081474001	Gene3D:3.40.50.1820	GO:A0A078JN56	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:AB_hydrolase	InterPro:IPR029058	InterPro:PLipase/COase/thioEstase	PANTHER:PTHR10655	PANTHER:PTHR10655:SF55
PFAM:PF02230	ProteinID:CDY68953	ProteinID:CDY68953.1	SEG:seg	SUPFAM:SSF53474	UniParc:UPI0004EE3437
UniProt:A0A078JN56	MapMan:35.2	:	:	:	:

Description

BnaA06g37430DBnaA06g37430D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JN56]

Coordinates

chrLK038327:+:1939..4085

Molecular Weight (calculated)

22538.2 Da

IEP (calculated)

6.991

GRAVY (calculated)

0.048

Length

206 amino acids

Sequence
(BLAST)

001: WLHDLDHIGR RCLEPLKDLN LPSIKWICPT APRLPVTSLA GQNATAWCDI TKVSESMQHD FESLDSVNSY VADLLSTEPT NVIKGVGGVG LGAAAALYFA
101: SSCAFGKVQI KQQMINPQIV IGINGWLPGL TSLQPNMNNA FGTFNRAKLQ RILLLHGTSD DVVPSEFGYK CAVSLRNNEF PTMFKQCGGN HVMTEICVWL
201: TQTFGL

Best Arabidopsis Sequence Match ( AT1G52695.1 )
(BLAST)

001: MASGSINVSG LEFGQINTVY PTGIHKATIV WLHDVGNTGF NSLEPLQNLR LPNIKWICPT APRRRVTSLG GEITNAWCDI AKVSENMQDD FGTLNYVNEY
101: ITSLFSNEPQ NVIKGVAGLG LGAAQALYYT SCYAFGWVPI NPQIVIGING WLPGWRRLEY NMNNTNFGTA NRAAASKILI LHGTSDDVVP SSFGYRCADS
201: LRMAGFPTLF KQCGGDHVIN EIRVWLTNLG L

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GY12]
SUBAcon: [plastid,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.