CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

plastid 3
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G22300.1	Thale cress	golgi	86.64	86.64
GSMUA_Achr1P09700_001	Banana	plastid	61.83	75.35
CDX94091	Canola	mitochondrion	64.5	70.42
TraesCS2A01G543000.1	Wheat	mitochondrion	58.4	69.23
PGSC0003DMT400034714	Potato	mitochondrion	66.79	68.9
KRH51154	Soybean	cytosol	24.05	68.48
Solyc11g012070.1.1	Tomato	extracellular	66.03	68.11
VIT_00s0612g00010.t01	Wine grape	cytosol	40.46	61.27
TraesCS2D01G544200.1	Wheat	mitochondrion	61.45	61.22
TraesCS2B01G572800.1	Wheat	mitochondrion	61.07	60.84
HORVU2Hr1G122470.1	Barley	mitochondrion	60.69	60.46
Os04t0669500-01	Rice	mitochondrion, vacuole	59.92	59.02
CDX98742	Canola	mitochondrion, vacuole	93.89	49.2
Zm00001d001903_P003	Maize	extracellular, mitochondrion, plastid	52.67	45.54
VIT_00s0515g00010.t01	Wine grape	cytosol	67.94	37.55
CDY02538	Canola	mitochondrion	25.95	26.67
CDY60557	Canola	plastid	25.57	26.27
CDY72010	Canola	mitochondrion	19.85	26.13
CDY58459	Canola	plastid	24.81	25.49
CDY21856	Canola	plastid	24.43	25.1
CDY20140	Canola	mitochondrion, plastid	24.43	25.1
CDY30093	Canola	plastid	24.05	24.71
CDX97691	Canola	plastid	23.28	23.92
CDX75839	Canola	plasma membrane	24.05	23.51
CDY62011	Canola	endoplasmic reticulum, plasma membrane	25.95	23.21
CDY68953	Canola	cytosol	17.18	21.84
CDY08787	Canola	cytosol, plasma membrane, plastid	19.85	21.76
CDY14573	Canola	cytosol, extracellular, plasma membrane	19.47	19.84
CDY28985	Canola	extracellular	7.25	17.76
CDY49908	Canola	cytosol	11.45	13.39
CDX87910	Canola	extracellular	13.36	13.11

Protein Annotations

EnsemblPlants:CDX94090	EnsemblPlantsGene:GSBRNA2T00156998001	Gene3D:3.40.50.1820	GO:A0A078DXQ4	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:AB_hydrolase	InterPro:IPR029058	InterPro:PLipase/COase/thioEstase	PANTHER:PTHR10655	PANTHER:PTHR10655:SF20
PFAM:PF02230	ProteinID:CDX94090	ProteinID:CDX94090.1	SEG:seg	SUPFAM:SSF53474	TMHMM:TMhelix
UniParc:UPI0004EE5330	MapMan:26.8.2.6	:	:	:	:

Description

BnaC07g37240D

Coordinates

chrLK031879:-:626728..628266

Molecular Weight (calculated)

28585.2 Da

IEP (calculated)

5.660

GRAVY (calculated)

0.083

Length

262 amino acids

Sequence
(BLAST)

001: MRTSTLTKPI VLLSIALLST VLFFAFFFEN KPYSSLSSSP SSSDLMARTF ILWLHGLGDS GPANEPIKSL FKSPEFMNTK WLFPSAPPNP VSCNYGMVMP
101: SWFDIRELPL TAGSPNDESS VLEAVKNVHA IIDKEIAGGI KPENVYICGF SQGGALTLAS VLLYPKTLGG GAVFSGWVPF NSSIINQFTK DAIKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAAVTCEFK AYPDLGHSIS NEELQYLESW IKQRMQSSSS SS

Best Arabidopsis Sequence Match ( AT4G22300.1 )
(BLAST)

001: MRTSRLKKPI VLLTIALLSS VFFFAFFFLN KSDVSSTSAL RNRDSMARTF ILWLHGLGDS GPANEPIKTL FRSQEFRNTK WLFPSAPPNP VSCNYGAVMP
101: SWFDIPELPL TAGSPKDESS LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF NSSITNQFTE DAKKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAGVTCEFK AYPGLGHSIS NEELQYLESW LKQRMQSSSS SS

Arabidopsis Description

SOBER1Probable carboxylesterase SOBER1-like [Source:UniProtKB/Swiss-Prot;Acc:Q8GYK2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.