Factsheet for PGSC0003DMT400034714

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012070.1.1	Tomato	extracellular	97.64	97.64
GSMUA_Achr1P09700_001	Banana	plastid	64.96	76.74
KRH02000	Soybean	extracellular, golgi	72.44	72.73
TraesCS2A01G543000.1	Wheat	mitochondrion	61.42	70.59
VIT_00s0612g00010.t01	Wine grape	cytosol	46.46	68.21
AT4G22305.1	Thale cress	cytosol, plastid	60.24	67.11
CDX94090	Canola	extracellular, vacuole	68.9	66.79
AT4G22300.1	Thale cress	golgi	68.9	66.79
Bra019386.1-P	Field mustard	vacuole	68.11	66.54
CDX94091	Canola	mitochondrion	58.27	61.67
HORVU2Hr1G122470.1	Barley	mitochondrion	62.99	60.84
TraesCS2D01G544200.1	Wheat	mitochondrion	62.99	60.84
Bra019385.1-P	Field mustard	cytosol	55.51	60.78
TraesCS2B01G572800.1	Wheat	mitochondrion	62.6	60.46
Os04t0669500-01	Rice	mitochondrion, vacuole	62.2	59.4
Zm00001d001903_P003	Maize	extracellular, mitochondrion, plastid	52.76	44.22
VIT_00s0515g00010.t01	Wine grape	cytosol	72.83	39.03
CDX98742	Canola	mitochondrion, vacuole	68.11	34.6
PGSC0003DMT400073482	Potato	plastid	25.59	25.39
PGSC0003DMT400073687	Potato	cytosol, nucleus, plastid	25.59	25.29
PGSC0003DMT400083903	Potato	plastid	23.23	23.14

Protein Annotations

EntrezGene:102602739	MapMan:26.8.2.6	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:IPR029058	UniProt:M1B164
PFAM:PF02230	EnsemblPlantsGene:PGSC0003DMG400013339	PGSC:PGSC0003DMG400013339	EnsemblPlants:PGSC0003DMT400034714	InterPro:PLipase/COase/thioEstase	PANTHER:PTHR10655
PANTHER:PTHR10655:SF20	SUPFAM:SSF53474	TMHMM:TMhelix	UniParc:UPI000294C057	RefSeq:XP_006352375.1	SEG:seg

Description

Acyl-protein thioesterase 1,2 [Source:PGSC_GENE;Acc:PGSC0003DMG400013339]

Coordinates

chr11:+:715830..721222

Molecular Weight (calculated)

27879.6 Da

IEP (calculated)

8.095

GRAVY (calculated)

-0.086

Length

254 amino acids

Sequence
(BLAST)

001: MKLVPLLKPF LVLLITFGFT IFFVRLIEPT NPSSPKNSEA MARSFILWLH GLGDSGPANE PIKGLFTSPQ FKNTKWSFPS APSKPVTCNY GSVMPSWFDI
101: HELPVSDSSP KDESDLLKAV KNVHAMIDKE IEAGTNPNNV FVCGFSQGGA LTLASVLLYP KTLGGGAVFS GWVPFNASIL EQQTPEAKKT PILWSHGMAD
201: KTVLFEAGQA GPPFLERAGM TCEFKAYPRL AHSINNEELK HLESWIKTRL QSNS

Best Arabidopsis Sequence Match ( AT4G22300.1 )
(BLAST)

001: MRTSRLKKPI VLLTIALLSS VFFFAFFFLN KSDVSSTSAL RNRDSMARTF ILWLHGLGDS GPANEPIKTL FRSQEFRNTK WLFPSAPPNP VSCNYGAVMP
101: SWFDIPELPL TAGSPKDESS LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF NSSITNQFTE DAKKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAGVTCEFK AYPGLGHSIS NEELQYLESW LKQRMQSSSS SS

Arabidopsis Description

SOBER1Probable carboxylesterase SOBER1-like [Source:UniProtKB/Swiss-Prot;Acc:Q8GYK2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.