Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94091 | Canola | mitochondrion | 78.07 | 74.17 |
| Bra019385.1-P | Field mustard | cytosol | 75.44 | 74.14 |
| GSMUA_Achr1P09700_001 | Banana | plastid | 66.23 | 70.23 |
| TraesCS2A01G543000.1 | Wheat | mitochondrion | 64.04 | 66.06 |
| AT4G22300.1 | Thale cress | golgi | 74.56 | 64.89 |
| VIT_00s0612g00010.t01 | Wine grape | cytosol | 46.05 | 60.69 |
| PGSC0003DMT400034714 | Potato | mitochondrion | 67.11 | 60.24 |
| Solyc11g012070.1.1 | Tomato | extracellular | 66.23 | 59.45 |
| KRH51154 | Soybean | cytosol | 23.68 | 58.7 |
| TraesCS2D01G544200.1 | Wheat | mitochondrion | 64.47 | 55.89 |
| TraesCS2B01G572800.1 | Wheat | mitochondrion | 64.47 | 55.89 |
| HORVU2Hr1G122470.1 | Barley | mitochondrion | 64.04 | 55.51 |
| Os04t0669500-01 | Rice | mitochondrion, vacuole | 64.04 | 54.89 |
| Zm00001d001903_P003 | Maize | extracellular, mitochondrion, plastid | 54.82 | 41.25 |
| VIT_00s0515g00010.t01 | Wine grape | cytosol | 67.54 | 32.49 |
| AT1G52700.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 28.07 | 25.1 |
| AT5G20060.2 | Thale cress | plastid | 26.32 | 23.81 |
| AT3G15650.2 | Thale cress | plastid | 28.51 | 23.72 |
| AT1G47780.1 | Thale cress | cytosol | 11.4 | 20.16 |
| AT1G52695.1 | Thale cress | cytoskeleton, cytosol, plastid | 19.3 | 19.05 |
| AT1G52440.1 | Thale cress | cytosol | 15.35 | 17.5 |
| AT1G51300.2 | Thale cress | plastid | 21.49 | 17.5 |
| AT1G47786.1 | Thale cress | extracellular | 13.16 | 16.13 |
| AT1G52460.1 | Thale cress | cytosol | 16.23 | 16.09 |
| AT1G52470.1 | Thale cress | cytosol | 15.35 | 14.89 |
Protein Annotations
| EntrezGene:10723040 | MapMan:26.8.2.6 | Gene3D:3.40.50.1820 | PDB:6AVV | PDB:6AVW | PDB:6AVX |
| InterPro:AB_hydrolase | ProteinID:AEE84590.1 | EMBL:AK227671 | ArrayExpress:AT4G22305 | EnsemblPlantsGene:AT4G22305 | RefSeq:AT4G22305 |
| TAIR:AT4G22305 | RefSeq:AT4G22305-TAIR-G | EnsemblPlants:AT4G22305.1 | TAIR:AT4G22305.1 | Unigene:At.75299 | EMBL:BT003123 |
| ProteinID:CAA16780.1 | ProteinID:CAB79185.1 | EMBL:EF100725 | GO:GO:0002084 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004623 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0006629 | GO:GO:0006631 | GO:GO:0006654 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008219 | GO:GO:0008474 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009814 | GO:GO:0009816 | GO:GO:0009987 | GO:GO:0010363 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0034338 | GO:GO:0052689 | InterPro:IPR029058 | RefSeq:NP_001190797.1 | PFAM:PF02230 |
| InterPro:PLipase/COase/thioEstase | PO:PO:0000293 | PANTHER:PTHR10655 | PANTHER:PTHR10655:SF20 | UniProt:Q84WK4 | SUPFAM:SSF53474 |
| UniParc:UPI000000BEF9 | : | : | : | : | : |
Description
SOBER1Carboxylesterase SOBER1 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK4]
Coordinates
chr4:-:11789332..11791207
Molecular Weight (calculated)
24846.8 Da
IEP (calculated)
6.011
GRAVY (calculated)
-0.006
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MARTFILWLH GLGDSGPANE PIQTQFKSSE LSNASWLFPS APFNPVTCNN GAVMRSWFDV PELPFKVGSP IDESSVLEAV KNVHAIIDQE IAEGTNPENV
101: FICGLSQGGA LTLASVLLYP KTLGGGAVLS GWVPFTSSII SQFPEEAKKT PILWSHGTDD RMVLFEAGQA ALPFLKEAGV TCEFKAYPGL GHSISNKELK
201: YIESWIKRRL KGSSSTCLQL NCLKEMFH
101: FICGLSQGGA LTLASVLLYP KTLGGGAVLS GWVPFTSSII SQFPEEAKKT PILWSHGTDD RMVLFEAGQA ALPFLKEAGV TCEFKAYPGL GHSISNKELK
201: YIESWIKRRL KGSSSTCLQL NCLKEMFH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.