Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94090 | Canola | extracellular, vacuole | 86.64 | 86.64 |
| Bra019386.1-P | Field mustard | vacuole | 85.5 | 86.15 |
| GSMUA_Achr1P09700_001 | Banana | plastid | 62.21 | 75.81 |
| AT4G22305.1 | Thale cress | cytosol, plastid | 64.89 | 74.56 |
| KRH51154 | Soybean | cytosol | 24.43 | 69.57 |
| PGSC0003DMT400034714 | Potato | mitochondrion | 66.79 | 68.9 |
| TraesCS2A01G543000.1 | Wheat | mitochondrion | 58.02 | 68.78 |
| Solyc11g012070.1.1 | Tomato | extracellular | 66.41 | 68.5 |
| VIT_00s0612g00010.t01 | Wine grape | cytosol | 41.6 | 63.01 |
| TraesCS2D01G544200.1 | Wheat | mitochondrion | 59.92 | 59.7 |
| TraesCS2B01G572800.1 | Wheat | mitochondrion | 59.54 | 59.32 |
| HORVU2Hr1G122470.1 | Barley | mitochondrion | 59.54 | 59.32 |
| Os04t0669500-01 | Rice | mitochondrion, vacuole | 59.92 | 59.02 |
| Zm00001d001903_P003 | Maize | extracellular, mitochondrion, plastid | 51.15 | 44.22 |
| CDX98742 | Canola | mitochondrion, vacuole | 84.35 | 44.2 |
| VIT_00s0515g00010.t01 | Wine grape | cytosol | 68.7 | 37.97 |
| AT5G20060.2 | Thale cress | plastid | 24.05 | 25.0 |
| AT1G52700.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 23.66 | 24.31 |
| AT3G15650.2 | Thale cress | plastid | 24.43 | 23.36 |
| AT1G47780.1 | Thale cress | cytosol | 10.31 | 20.93 |
| AT1G51300.2 | Thale cress | plastid | 20.99 | 19.64 |
| AT1G52695.1 | Thale cress | cytoskeleton, cytosol, plastid | 16.41 | 18.61 |
| AT1G52440.1 | Thale cress | cytosol | 14.12 | 18.5 |
| AT1G47786.1 | Thale cress | extracellular | 12.98 | 18.28 |
| AT1G52460.1 | Thale cress | cytosol | 15.65 | 17.83 |
| AT1G52470.1 | Thale cress | cytosol | 14.5 | 16.17 |
Protein Annotations
| MapMan:26.8.2.6 | Gene3D:3.40.50.1820 | EntrezGene:828325 | InterPro:AB_hydrolase | ProteinID:AEE84589.1 | EMBL:AK117563 |
| EMBL:AL021712 | ArrayExpress:AT4G22300 | EnsemblPlantsGene:AT4G22300 | RefSeq:AT4G22300 | TAIR:AT4G22300 | RefSeq:AT4G22300-TAIR-G |
| EnsemblPlants:AT4G22300.1 | TAIR:AT4G22300.1 | Unigene:At.32550 | EMBL:EF100726 | GO:GO:0002084 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 |
| GO:GO:0006464 | GO:GO:0006629 | GO:GO:0006631 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008219 | GO:GO:0008474 | GO:GO:0009056 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009814 |
| GO:GO:0009987 | GO:GO:0010363 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0052689 |
| InterPro:IPR029058 | RefSeq:NP_193961.3 | PFAM:PF02230 | InterPro:PLipase/COase/thioEstase | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10655 | PANTHER:PTHR10655:SF20 |
| UniProt:Q8GYK2 | Symbol:SOBER1 | SUPFAM:SSF53474 | TMHMM:TMhelix | UniParc:UPI00000ADDC2 | SEG:seg |
Description
SOBER1Probable carboxylesterase SOBER1-like [Source:UniProtKB/Swiss-Prot;Acc:Q8GYK2]
Coordinates
chr4:-:11787299..11789312
Molecular Weight (calculated)
28704.4 Da
IEP (calculated)
8.464
GRAVY (calculated)
-0.020
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSRLKKPI VLLTIALLSS VFFFAFFFLN KSDVSSTSAL RNRDSMARTF ILWLHGLGDS GPANEPIKTL FRSQEFRNTK WLFPSAPPNP VSCNYGAVMP
101: SWFDIPELPL TAGSPKDESS LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF NSSITNQFTE DAKKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAGVTCEFK AYPGLGHSIS NEELQYLESW LKQRMQSSSS SS
101: SWFDIPELPL TAGSPKDESS LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF NSSITNQFTE DAKKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAGVTCEFK AYPGLGHSIS NEELQYLESW LKQRMQSSSS SS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.