CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019386.1-P	Field mustard	vacuole	50.6	97.31
CDX94090	Canola	extracellular, vacuole	49.2	93.89
AT4G22300.1	Thale cress	golgi	44.2	84.35
CDX94091	Canola	mitochondrion	37.8	78.75
GSMUA_Achr1P09700_001	Banana	plastid	32.0	74.42
KRH51154	Soybean	cytosol	13.0	70.65
TraesCS2A01G543000.1	Wheat	mitochondrion	31.2	70.59
PGSC0003DMT400034714	Potato	mitochondrion	34.6	68.11
Solyc11g012070.1.1	Tomato	extracellular	34.2	67.32
VIT_00s0515g00010.t01	Wine grape	cytosol	61.8	65.19
TraesCS2D01G544200.1	Wheat	mitochondrion	33.2	63.12
TraesCS2B01G572800.1	Wheat	mitochondrion	33.0	62.74
HORVU2Hr1G122470.1	Barley	mitochondrion	32.8	62.36
VIT_00s0612g00010.t01	Wine grape	cytosol	21.0	60.69
Os04t0669500-01	Rice	mitochondrion, vacuole	32.2	60.53
Zm00001d001903_P003	Maize	extracellular, mitochondrion, plastid	28.0	46.2
CDY60557	Canola	plastid	14.2	27.84
CDY02538	Canola	mitochondrion	14.2	27.84
CDY72010	Canola	mitochondrion	10.8	27.14
CDY58459	Canola	plastid	13.8	27.06
CDY20140	Canola	mitochondrion, plastid	13.6	26.67
CDY30093	Canola	plastid	13.4	26.27
CDY21856	Canola	plastid	13.4	26.27
CDX97691	Canola	plastid	13.0	25.49
CDX75839	Canola	plasma membrane	13.6	25.37
CDY62011	Canola	endoplasmic reticulum, plasma membrane	14.6	24.91
CDY08787	Canola	cytosol, plasma membrane, plastid	10.8	22.59
CDY68953	Canola	cytosol	9.0	21.84
CDY28985	Canola	extracellular	4.6	21.5
CDY14573	Canola	cytosol, extracellular, plasma membrane	10.6	20.62
CDY49908	Canola	cytosol	6.2	13.84
CDX87910	Canola	extracellular	6.8	12.73

Protein Annotations

EnsemblPlants:CDX98742	EnsemblPlantsGene:GSBRNA2T00106814001	Gene3D:3.40.50.1820	GO:A0A078ECJ1	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:AB_hydrolase	InterPro:IPR029058	InterPro:PLipase/COase/thioEstase	PANTHER:PTHR10655	PANTHER:PTHR10655:SF20
PFAM:PF02230	ProteinID:CDX98742	ProteinID:CDX98742.1	SEG:seg	SUPFAM:SSF53474	TMHMM:TMhelix
UniParc:UPI0004EEDE30	MapMan:26.8.2.6	:	:	:	:

Description

BnaA03g45270D

Coordinates

chrLK031906:-:988702..991891

Molecular Weight (calculated)

54628.2 Da

IEP (calculated)

5.289

GRAVY (calculated)

0.012

Length

500 amino acids

Sequence
(BLAST)

001: MVNKLLRNCF LCISSCSGSS DAMARRPFIL WLHGLGDSGP ANEHVKTVFK SPELSDAKWL FPSAPYNPVT CNKGRVMPSW FDVPELPFRA GSRIDETSIL
101: EAVKNVHAII DEEIASGTRP ENVFICGLSQ GGALTLASVL LYPKTLGGGA VLSGWVPLSS SIINQFPEEA KNTPILWSHV TDDELVLFEA GQAALPFLEQ
201: AGVTCEFKAY PGLAHWMSNK ELQYIESWIK SRMQSSSIDI DMRTSTLTRP IVLLSIALLS TVLFFAFFFE DKPYSSSSQN PMARTFILWL HGLGDSGPAN
301: EPIKSLFKSP EFSNTKWLFP SAPPNPVSCN YGMVMPSWFD IRELPLTAGS PNDESSVLEA VKNVHATIDK EIAGGIKPEN VYICGFSQGG ALTLASVLLY
401: PKTLGGGAVF SGWVPFSSSV INQFTKDAIK TPILWSHGID DKTVLFEAGQ AALPFLQQAG VTCEFKAYPD LGHSISNEEL QYLESWIKQR MQTSSSSSSS

Best Arabidopsis Sequence Match ( AT4G22300.1 )
(BLAST)

001: MRTSRLKKPI VLLTIALLSS VFFFAFFFLN KSDVSSTSAL RNRDSMARTF ILWLHGLGDS GPANEPIKTL FRSQEFRNTK WLFPSAPPNP VSCNYGAVMP
101: SWFDIPELPL TAGSPKDESS LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF NSSITNQFTE DAKKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAGVTCEFK AYPGLGHSIS NEELQYLESW LKQRMQSSSS SS

Arabidopsis Description

SOBER1Probable carboxylesterase SOBER1-like [Source:UniProtKB/Swiss-Prot;Acc:Q8GYK2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.