CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	extracellular, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08787	Canola	cytosol, plasma membrane, plastid	89.49	96.23
CDY72010	Canola	mitochondrion	33.07	42.71
CDY60557	Canola	plastid	40.47	40.78
CDY68953	Canola	cytosol	32.68	40.78
CDY02538	Canola	mitochondrion	40.08	40.39
CDY58459	Canola	plastid	38.52	38.82
CDY21856	Canola	plastid	38.13	38.43
CDY30093	Canola	plastid	38.13	38.43
CDY20140	Canola	mitochondrion, plastid	38.13	38.43
CDX97691	Canola	plastid	37.74	38.04
CDX75839	Canola	plasma membrane	37.74	36.19
CDY62011	Canola	endoplasmic reticulum, plasma membrane	40.08	35.15
CDY49908	Canola	cytosol	26.85	30.8
CDX87910	Canola	extracellular	29.57	28.46
CDY28985	Canola	extracellular	10.12	24.3
CDX94091	Canola	mitochondrion	18.68	20.0
CDX94090	Canola	extracellular, vacuole	19.84	19.47
CDX98742	Canola	mitochondrion, vacuole	20.62	10.6

Protein Annotations

EnsemblPlants:CDY14573	EnsemblPlantsGene:GSBRNA2T00079323001	Gene3D:3.40.50.1820	GO:A0A078FQI5	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:AB_hydrolase	InterPro:IPR029058	InterPro:PLipase/COase/thioEstase	ncoils:Coil	PANTHER:PTHR10655
PANTHER:PTHR10655:SF55	PFAM:PF02230	ProteinID:CDY14573	ProteinID:CDY14573.1	SUPFAM:SSF53474	UniParc:UPI0004EE8E67
UniProt:A0A078FQI5	MapMan:35.2	:	:	:	:

Description

BnaC03g48860DBnaC03g48860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQI5]

Coordinates

chrLK032044:-:764657..768852

Molecular Weight (calculated)

28110.9 Da

IEP (calculated)

6.776

GRAVY (calculated)

0.169

Length

257 amino acids

Sequence
(BLAST)

001: MEGALQFWFA TRFVTDYIMN LCLVKIFTDS NGIAYGVTRL VRPRGTHKAT IVWLHDIGEN GDDSARFVRE LNLPNVQIRE HIKWICPTAP TRPVSRLGGA
101: VTTAWCDVTQ VSENMEHDLA SINTTCVLVA NLLAGEPAHV MKGVGGIGLG AAQALYFASC YVVGGMRDMG LNAVVGINGW LPAWTNFLYH IDSLTVSGTL
201: AASLPILLTN ENSMVPFQFG WLSEQSLSRA GIPVTFRPND GRDPTAIGNW LKTYLQL

Best Arabidopsis Sequence Match ( AT1G52695.1 )
(BLAST)

001: MASGSINVSG LEFGQINTVY PTGIHKATIV WLHDVGNTGF NSLEPLQNLR LPNIKWICPT APRRRVTSLG GEITNAWCDI AKVSENMQDD FGTLNYVNEY
101: ITSLFSNEPQ NVIKGVAGLG LGAAQALYYT SCYAFGWVPI NPQIVIGING WLPGWRRLEY NMNNTNFGTA NRAAASKILI LHGTSDDVVP SSFGYRCADS
201: LRMAGFPTLF KQCGGDHVIN EIRVWLTNLG L

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GY12]
SUBAcon: [plastid,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.