CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019385.1-P	Field mustard	cytosol	84.58	87.5
AT4G22305.1	Thale cress	cytosol, plastid	74.17	78.07
GSMUA_Achr1P09700_001	Banana	plastid	59.17	66.05
CDX94090	Canola	extracellular, vacuole	70.42	64.5
TraesCS2A01G543000.1	Wheat	mitochondrion	56.25	61.09
KRH51154	Soybean	cytosol	22.5	58.7
PGSC0003DMT400034714	Potato	mitochondrion	61.67	58.27
Solyc11g012070.1.1	Tomato	extracellular	61.25	57.87
VIT_00s0612g00010.t01	Wine grape	cytosol	40.42	56.07
TraesCS2D01G544200.1	Wheat	mitochondrion	57.08	52.09
TraesCS2B01G572800.1	Wheat	mitochondrion	57.08	52.09
HORVU2Hr1G122470.1	Barley	mitochondrion	56.67	51.71
Os04t0669500-01	Rice	mitochondrion, vacuole	56.67	51.13
Zm00001d001903_P003	Maize	extracellular, mitochondrion, plastid	51.25	40.59
CDX98742	Canola	mitochondrion, vacuole	78.75	37.8
VIT_00s0515g00010.t01	Wine grape	cytosol	62.92	31.86
CDY60557	Canola	plastid	29.17	27.45
CDY58459	Canola	plastid	28.33	26.67
CDY20140	Canola	mitochondrion, plastid	27.92	26.27
CDY02538	Canola	mitochondrion	27.92	26.27
CDY30093	Canola	plastid	27.5	25.88
CDY21856	Canola	plastid	27.5	25.88
CDY72010	Canola	mitochondrion	20.83	25.13
CDX97691	Canola	plastid	26.67	25.1
CDX75839	Canola	plasma membrane	27.5	24.63
CDY62011	Canola	endoplasmic reticulum, plasma membrane	29.58	24.23
CDY68953	Canola	cytosol	17.92	20.87
CDY08787	Canola	cytosol, plasma membrane, plastid	20.0	20.08
CDY14573	Canola	cytosol, extracellular, plasma membrane	20.0	18.68
CDY28985	Canola	extracellular	7.08	15.89
CDY49908	Canola	cytosol	11.67	12.5
CDX87910	Canola	extracellular	13.33	11.98

Protein Annotations

MapMan:26.8.2.6	Gene3D:3.40.50.1820	GO:A0A078DXY9	InterPro:AB_hydrolase	EnsemblPlants:CDX94091	ProteinID:CDX94091
ProteinID:CDX94091.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004623	GO:GO:0006629	GO:GO:0006654
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009814	GO:GO:0009816	GO:GO:0009987	GO:GO:0010363	GO:GO:0016787
GO:GO:0034338	GO:GO:0052689	EnsemblPlantsGene:GSBRNA2T00156999001	InterPro:IPR029058	PFAM:PF02230	InterPro:PLipase/COase/thioEstase
PANTHER:PTHR10655	PANTHER:PTHR10655:SF20	SUPFAM:SSF53474	UniParc:UPI0004EE15B3	SEG:seg	:

Description

BnaC07g37250DCarboxylesterase SOBER1 [Source:Projected from Arabidopsis thaliana (AT4G22305) UniProtKB/Swiss-Prot;Acc:Q84WK4]

Coordinates

chrLK031879:-:628446..629869

Molecular Weight (calculated)

26151.3 Da

IEP (calculated)

6.900

GRAVY (calculated)

-0.035

Length

240 amino acids

Sequence
(BLAST)

001: MVNKLLRNCF LCISSCSGSS DAMARRPFIL WLHGLGDSGP ANENVKTVFK SPELSDAKWL FPSAPYNPVT CNNGRVMPSW FDVPELPFKA GSRIDEASIL
101: EAVKNVHAII DEEIARGTRP ENVFICGLSQ GGALTLASVL LYPKTLGGGA VLSGWVPFTS SVINQFPEQA KKTPILWSHG TDDKLVLLEA GQAALPFLEQ
201: AGVTCEFKAY PGLAHWMSNK ELQYIESWIK SRMQSSSSSS

Best Arabidopsis Sequence Match ( AT4G22305.1 )
(BLAST)

001: MARTFILWLH GLGDSGPANE PIQTQFKSSE LSNASWLFPS APFNPVTCNN GAVMRSWFDV PELPFKVGSP IDESSVLEAV KNVHAIIDQE IAEGTNPENV
101: FICGLSQGGA LTLASVLLYP KTLGGGAVLS GWVPFTSSII SQFPEEAKKT PILWSHGTDD RMVLFEAGQA ALPFLKEAGV TCEFKAYPGL GHSISNKELK
201: YIESWIKRRL KGSSSTCLQL NCLKEMFH

Arabidopsis Description

SOBER1Carboxylesterase SOBER1 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.