Factsheet for Solyc11g012070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034714	Potato	mitochondrion	97.64	97.64
GSMUA_Achr1P09700_001	Banana	plastid	65.35	77.21
KRH02000	Soybean	extracellular, golgi	72.05	72.33
TraesCS2A01G543000.1	Wheat	mitochondrion	60.24	69.23
VIT_00s0612g00010.t01	Wine grape	cytosol	46.85	68.79
AT4G22300.1	Thale cress	golgi	68.5	66.41
AT4G22305.1	Thale cress	cytosol, plastid	59.45	66.23
CDX94090	Canola	extracellular, vacuole	68.11	66.03
Bra019386.1-P	Field mustard	vacuole	67.32	65.77
CDX94091	Canola	mitochondrion	57.87	61.25
Bra019385.1-P	Field mustard	cytosol	55.12	60.34
HORVU2Hr1G122470.1	Barley	mitochondrion	61.81	59.7
TraesCS2D01G544200.1	Wheat	mitochondrion	61.81	59.7
TraesCS2B01G572800.1	Wheat	mitochondrion	61.42	59.32
Os04t0669500-01	Rice	mitochondrion, vacuole	61.02	58.27
Zm00001d001903_P003	Maize	extracellular, mitochondrion, plastid	53.15	44.55
VIT_00s0515g00010.t01	Wine grape	cytosol	73.62	39.45
CDX98742	Canola	mitochondrion, vacuole	67.32	34.2
Solyc06g067950.2.1	Tomato	plastid	25.59	25.39
Solyc12g042890.1.1	Tomato	cytosol, nucleus, plastid	25.59	25.29
Solyc12g006870.1.1	Tomato	plastid	25.2	25.0
Solyc08g067160.2.1	Tomato	plastid	24.41	24.31

Protein Annotations

MapMan:26.8.2.6	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	GO:GO:0002084	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008474	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	GO:GO:0052689	InterPro:IPR029058	UniProt:K4D612	PFAM:PF02230
InterPro:PLipase/COase/thioEstase	PANTHER:PTHR10655	PANTHER:PTHR10655:SF20	SUPFAM:SSF53474	EnsemblPlantsGene:Solyc11g012070.1	EnsemblPlants:Solyc11g012070.1.1
TMHMM:TMhelix	UniParc:UPI0002769DEA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:5009272..5013900

Molecular Weight (calculated)

27920.6 Da

IEP (calculated)

7.556

GRAVY (calculated)

-0.075

Length

254 amino acids

Sequence
(BLAST)

001: MKLVPLLKPF LVLLITFGFT IFFVRLIEPT NSSPPKNSEA MARSFILWLH GLGDSGPANE PIKGLFTSPQ FKNTKWSFPS APSKPVTCNY GSVMPSWFDI
101: HEIPVSDSSP KDETDLLKAV KNVHAMIDKE IEAGTNPNNV FVCGFSQGGA LTLASVLLYP KTLGGGAVFS GWVPFNASIL EQQTPEAKKT PILWSHGMAD
201: KTVLFEAGEA GPPFLERAGM TCEFKAYPRL AHSINNEELK YLESWIKTRL QSNS

Best Arabidopsis Sequence Match ( AT4G22300.1 )
(BLAST)

001: MRTSRLKKPI VLLTIALLSS VFFFAFFFLN KSDVSSTSAL RNRDSMARTF ILWLHGLGDS GPANEPIKTL FRSQEFRNTK WLFPSAPPNP VSCNYGAVMP
101: SWFDIPELPL TAGSPKDESS LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF NSSITNQFTE DAKKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAGVTCEFK AYPGLGHSIS NEELQYLESW LKQRMQSSSS SS

Arabidopsis Description

SOBER1Probable carboxylesterase SOBER1-like [Source:UniProtKB/Swiss-Prot;Acc:Q8GYK2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.