Factsheet for Solyc12g042890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073687	Potato	cytosol, nucleus, plastid	100.0	100.0
Solyc06g067950.2.1	Tomato	plastid	87.55	87.89
KRH23541	Soybean	cytosol, mitochondrion, plastid	77.82	78.12
KRH44416	Soybean	mitochondrion	77.82	78.12
CDY72010	Canola	mitochondrion	57.98	74.87
Bra027221.1-P	Field mustard	mitochondrion	71.6	74.19
Bra021124.1-P	Field mustard	plastid	73.54	74.12
AT1G52700.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	73.15	73.73
CDY60557	Canola	plastid	73.15	73.73
CDY20140	Canola	mitochondrion, plastid	73.15	73.73
CDY21856	Canola	plastid	72.76	73.33
CDY58459	Canola	plastid	72.76	73.33
CDX97691	Canola	plastid	72.76	73.33
Bra030973.1-P	Field mustard	cytosol, mitochondrion, plastid	72.76	73.33
CDY02538	Canola	mitochondrion	72.37	72.94
CDY30093	Canola	plastid	72.37	72.94
VIT_09s0002g06010.t01	Wine grape	extracellular	82.49	72.6
KRH47496	Soybean	plastid	76.26	72.32
GSMUA_Achr6P01610_001	Banana	plastid	70.43	70.16
Bra001602.1-P	Field mustard	endoplasmic reticulum, extracellular	72.37	69.4
Bra030370.1-P	Field mustard	extracellular	70.82	69.2
TraesCS1A01G428100.1	Wheat	plastid	68.09	68.9
CDX75839	Canola	plasma membrane	71.6	68.66
AT3G15650.2	Thale cress	plastid	73.15	68.61
TraesCS1D01G437600.1	Wheat	plastid	67.7	68.5
TraesCS1B01G463000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	67.7	68.5
KRH09772	Soybean	plastid	77.82	68.49
Solyc08g067160.2.1	Tomato	plastid	67.7	68.24
Zm00001d009726_P002	Maize	mitochondrion	66.54	67.32
Os04t0174900-01	Rice	plastid	66.54	67.32
KXG32884	Sorghum	plastid	64.98	67.07
OQU78517	Sorghum	mitochondrion	66.15	66.93
Zm00001d044460_P001	Maize	cytosol	63.81	66.67
TraesCS3A01G219200.1	Wheat	mitochondrion	64.59	66.67
Solyc12g006870.1.1	Tomato	plastid	64.98	65.23
TraesCS3B01G249600.2	Wheat	mitochondrion	63.81	65.08
GSMUA_Achr6P01540_001	Banana	mitochondrion	68.48	64.71
TraesCS3D01G233300.1	Wheat	mitochondrion	63.42	64.68
CDY62011	Canola	endoplasmic reticulum, plasma membrane	73.15	64.16
Os01t0612500-01	Rice	plastid	59.92	63.37
HORVU6Hr1G043710.1	Barley	cytosol, extracellular, mitochondrion, plastid	27.63	59.17
Os05t0588100-00	Rice	cytosol	58.37	52.82
HORVU1Hr1G093460.5	Barley	cytosol, plastid	63.03	51.92
TraesCS3B01G193000.1	Wheat	extracellular, peroxisome	22.96	46.46
HORVU7Hr1G061760.2	Barley	mitochondrion	36.58	44.55
Solyc11g012070.1.1	Tomato	extracellular	25.29	25.59

Protein Annotations

Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	GO:GO:0002084	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008474	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0052689	InterPro:IPR029058	UniProt:K4DF78	PFAM:PF02230	InterPro:PLipase/COase/thioEstase	PANTHER:PTHR10655
PANTHER:PTHR10655:SF34	MEROPS:S09.A56	SUPFAM:SSF53474	EnsemblPlantsGene:Solyc12g042890.1	EnsemblPlants:Solyc12g042890.1.1	UniParc:UPI0002769433
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:39541825..39544102

Molecular Weight (calculated)

27714.0 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.193

Length

257 amino acids

Sequence
(BLAST)

001: MSYINPSMGS GSRTARRTME FGRTYVVRPK GKHQATMVWL HGLGDNGSSS SQLLESLALP NIKWICPTAP TRPVAILGGF PCTAWFDAGE LSDDTTNDLE
101: GLEASVAHIA NLLSTEPADV KLGIGGFSMG AATALYSATC FAHGKYGNGN PYPVNLRAVI GLSGWLPGSR NVRNKIEGSH EAARCAASLP ILLCHGKCDE
201: VVPYRYGERA SYVLSSAGFR NLQFKAYDGL GHYTVPREMD EVCNWLNARL GLEGSRR

Best Arabidopsis Sequence Match ( AT1G52700.2 )
(BLAST)

001: MSYSHQSMGS GSRNARGYEF GRTYVVRPKG KHQATLVWLH GLGDNGSSSS QLMDSLHLPN IKWICPTAPS RPVTSLGGFT CTAWFDVGEI SEDGHDDLEG
101: LDASASHIAN LLSSEPADVK VGIGGFSMGA AISLYSATCY ALGRYGTGHA YPINLQAVVG LSGWLPGWKS LRSKIECSFE AARRAASLPI ILTHGTSDDV
201: VPYRFGEKSA QSLGMAGFRL AMFKPYEGLG HYTVPREMDE VVHWLTTMLG LEGSR

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AQT5]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.