Factsheet for PGSC0003DMT400073687

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042890.1.1	Tomato	cytosol, nucleus, plastid	100.0	100.0
PGSC0003DMT400073482	Potato	plastid	87.94	88.28
KRH44416	Soybean	mitochondrion	77.82	78.12
KRH23541	Soybean	cytosol, mitochondrion, plastid	77.82	78.12
CDY72010	Canola	mitochondrion	57.98	74.87
Bra027221.1-P	Field mustard	mitochondrion	71.6	74.19
Bra021124.1-P	Field mustard	plastid	73.54	74.12
AT1G52700.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	73.15	73.73
CDY60557	Canola	plastid	73.15	73.73
CDY20140	Canola	mitochondrion, plastid	73.15	73.73
CDY58459	Canola	plastid	72.76	73.33
CDY21856	Canola	plastid	72.76	73.33
CDX97691	Canola	plastid	72.76	73.33
Bra030973.1-P	Field mustard	cytosol, mitochondrion, plastid	72.76	73.33
CDY30093	Canola	plastid	72.37	72.94
CDY02538	Canola	mitochondrion	72.37	72.94
VIT_09s0002g06010.t01	Wine grape	extracellular	82.49	72.6
KRH47496	Soybean	plastid	76.26	72.32
GSMUA_Achr6P01610_001	Banana	plastid	70.43	70.16
Bra001602.1-P	Field mustard	endoplasmic reticulum, extracellular	72.37	69.4
Bra030370.1-P	Field mustard	extracellular	70.82	69.2
TraesCS1A01G428100.1	Wheat	plastid	68.09	68.9
CDX75839	Canola	plasma membrane	71.6	68.66
AT3G15650.2	Thale cress	plastid	73.15	68.61
TraesCS1D01G437600.1	Wheat	plastid	67.7	68.5
TraesCS1B01G463000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	67.7	68.5
KRH09772	Soybean	plastid	77.82	68.49
PGSC0003DMT400083903	Potato	plastid	67.32	67.84
Os04t0174900-01	Rice	plastid	66.54	67.32
Zm00001d009726_P002	Maize	mitochondrion	66.54	67.32
KXG32884	Sorghum	plastid	64.98	67.07
OQU78517	Sorghum	mitochondrion	66.15	66.93
Zm00001d044460_P001	Maize	cytosol	63.81	66.67
TraesCS3A01G219200.1	Wheat	mitochondrion	64.59	66.67
TraesCS3B01G249600.2	Wheat	mitochondrion	63.81	65.08
GSMUA_Achr6P01540_001	Banana	mitochondrion	68.48	64.71
TraesCS3D01G233300.1	Wheat	mitochondrion	63.42	64.68
CDY62011	Canola	endoplasmic reticulum, plasma membrane	73.15	64.16
Os01t0612500-01	Rice	plastid	59.92	63.37
HORVU6Hr1G043710.1	Barley	cytosol, extracellular, mitochondrion, plastid	27.63	59.17
Os05t0588100-00	Rice	cytosol	58.37	52.82
HORVU1Hr1G093460.5	Barley	cytosol, plastid	63.03	51.92
TraesCS3B01G193000.1	Wheat	extracellular, peroxisome	22.96	46.46
HORVU7Hr1G061760.2	Barley	mitochondrion	36.58	44.55
PGSC0003DMT400034714	Potato	mitochondrion	25.29	25.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400073687	EnsemblPlantsGene:PGSC0003DMG400028622	EntrezGene:102578306	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:AB_hydrolase	InterPro:IPR029058	InterPro:PLipase/COase/thioEstase	MEROPS:S09.A56	PANTHER:PTHR10655
PANTHER:PTHR10655:SF34	PFAM:PF02230	PGSC:PGSC0003DMG400028622	RefSeq:XP_006346592.1	SEG:seg	SUPFAM:SSF53474
UniParc:UPI0002769433	UniProt:M1CSG8	MapMan:35.1	:	:	:

Description

Acyl-protein thioesterase [Source:PGSC_GENE;Acc:PGSC0003DMG400028622]

Coordinates

chr12:-:49850041..49852913

Molecular Weight (calculated)

27714.0 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.193

Length

257 amino acids

Sequence
(BLAST)

001: MSYINPSMGS GSRTARRTME FGRTYVVRPK GKHQATMVWL HGLGDNGSSS SQLLESLALP NIKWICPTAP TRPVAILGGF PCTAWFDAGE LSDDTTNDLE
101: GLEASVAHIA NLLSTEPADV KLGIGGFSMG AATALYSATC FAHGKYGNGN PYPVNLRAVI GLSGWLPGSR NVRNKIEGSH EAARCAASLP ILLCHGKCDE
201: VVPYRYGERA SYVLSSAGFR NLQFKAYDGL GHYTVPREMD EVCNWLNARL GLEGSRR

Best Arabidopsis Sequence Match ( AT1G52700.2 )
(BLAST)

001: MSYSHQSMGS GSRNARGYEF GRTYVVRPKG KHQATLVWLH GLGDNGSSSS QLMDSLHLPN IKWICPTAPS RPVTSLGGFT CTAWFDVGEI SEDGHDDLEG
101: LDASASHIAN LLSSEPADVK VGIGGFSMGA AISLYSATCY ALGRYGTGHA YPINLQAVVG LSGWLPGWKS LRSKIECSFE AARRAASLPI ILTHGTSDDV
201: VPYRFGEKSA QSLGMAGFRL AMFKPYEGLG HYTVPREMDE VVHWLTTMLG LEGSR

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AQT5]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.