Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G52440.1 | Thale cress | cytosol | 68.26 | 78.5 |
| AT1G52470.1 | Thale cress | cytosol | 51.3 | 50.21 |
| CDY49908 | Canola | cytosol | 38.26 | 39.29 |
| AT1G52700.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 40.43 | 36.47 |
| CDX87910 | Canola | extracellular | 40.87 | 35.21 |
| AT3G15650.2 | Thale cress | plastid | 40.43 | 33.94 |
| AT1G52695.1 | Thale cress | cytoskeleton, cytosol, plastid | 33.48 | 33.33 |
| AT5G20060.2 | Thale cress | plastid | 36.09 | 32.94 |
| AT1G47780.1 | Thale cress | cytosol | 17.39 | 31.01 |
| AT1G51300.2 | Thale cress | plastid | 36.96 | 30.36 |
| AT1G47786.1 | Thale cress | extracellular | 23.04 | 28.49 |
| AT4G22305.1 | Thale cress | cytosol, plastid | 16.09 | 16.23 |
| AT4G22300.1 | Thale cress | golgi | 17.83 | 15.65 |
Protein Annotations
| Gene3D:3.40.50.1820 | MapMan:35.2 | EntrezGene:841677 | ProteinID:AAD55619.1 | InterPro:AB_hydrolase | ProteinID:AEE32809.1 |
| ArrayExpress:AT1G52460 | EnsemblPlantsGene:AT1G52460 | RefSeq:AT1G52460 | TAIR:AT1G52460 | RefSeq:AT1G52460-TAIR-G | EnsemblPlants:AT1G52460.1 |
| TAIR:AT1G52460.1 | EMBL:AY600529 | Unigene:At.50795 | GO:GO:0002084 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008474 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0052689 | InterPro:IPR029058 | RefSeq:NP_175655.2 | PANTHER:PTHR10655 | PANTHER:PTHR10655:SF55 | UniProt:Q9SSQ0 |
| SUPFAM:SSF53474 | UniParc:UPI00000A18BC | SEG:seg | : | : | : |
Description
Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SSQ0]
Coordinates
chr1:+:19549331..19551282
Molecular Weight (calculated)
25570.8 Da
IEP (calculated)
8.244
GRAVY (calculated)
-0.057
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASSSSNRA DFVVQPKGEH RVTIVWLHDK DEHFSDSVQF VKILNLNNIK WICPSLVLPT SRNKPEYNIN HALYLTAERV ANLFSDEPEN VIKGVGGFGM
101: GAAVALHFAT SCALNHYTIN PRVVVGISGW LSKAKSLKRS IEFASYEAPP RAASQSILLT HGQRDHVPHL CGCGEEAAFI LREAGFRDVR FLPFARFGPI
201: AHEINRNVMV KSWLEEKLPL DVVLAKECLP
101: GAAVALHFAT SCALNHYTIN PRVVVGISGW LSKAKSLKRS IEFASYEAPP RAASQSILLT HGQRDHVPHL CGCGEEAAFI LREAGFRDVR FLPFARFGPI
201: AHEINRNVMV KSWLEEKLPL DVVLAKECLP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.