Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G52460.1 | Thale cress | cytosol | 78.5 | 68.26 |
| AT1G52470.1 | Thale cress | cytosol | 54.0 | 45.96 |
| CDY49908 | Canola | cytosol | 41.0 | 36.61 |
| AT1G52700.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 38.0 | 29.8 |
| CDX87910 | Canola | extracellular | 39.5 | 29.59 |
| AT1G52695.1 | Thale cress | cytoskeleton, cytosol, plastid | 34.0 | 29.44 |
| AT3G15650.2 | Thale cress | plastid | 39.0 | 28.47 |
| AT5G20060.2 | Thale cress | plastid | 34.5 | 27.38 |
| AT1G51300.2 | Thale cress | plastid | 35.5 | 25.36 |
| AT1G47780.1 | Thale cress | cytosol | 16.0 | 24.81 |
| AT1G47786.1 | Thale cress | extracellular | 22.5 | 24.19 |
| AT4G22305.1 | Thale cress | cytosol, plastid | 17.5 | 15.35 |
| AT4G22300.1 | Thale cress | golgi | 18.5 | 14.12 |
Protein Annotations
| Gene3D:3.40.50.1820 | MapMan:35.2 | EntrezGene:841675 | ProteinID:AAD55620.1 | InterPro:AB_hydrolase | ProteinID:AEE32807.1 |
| ArrayExpress:AT1G52440 | EnsemblPlantsGene:AT1G52440 | RefSeq:AT1G52440 | TAIR:AT1G52440 | RefSeq:AT1G52440-TAIR-G | EnsemblPlants:AT1G52440.1 |
| TAIR:AT1G52440.1 | Unigene:At.70375 | GO:GO:0002084 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008474 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0052689 |
| InterPro:IPR029058 | RefSeq:NP_175653.2 | PANTHER:PTHR10655 | PANTHER:PTHR10655:SF55 | UniProt:Q9SSP8 | SUPFAM:SSF53474 |
| UniParc:UPI000009DDF0 | SEG:seg | : | : | : | : |
Description
Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SSP8]
Coordinates
chr1:+:19538821..19540907
Molecular Weight (calculated)
21837.0 Da
IEP (calculated)
7.220
GRAVY (calculated)
-0.130
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASDSRNNR ADEPGFVVQP KGEHRVIIVW LHDKDERSSD SLQFVEQLNL KNVKWICPSL VFPDSFIKGV GGLGMGAAVA LHFATSCALN HYTINPRVVV
101: GISGWLSNSG SLKRSIESAS HGAPARAASQ SIFITHGICD SVPHPCDCGE EAVLSLREAG FRDVKFTPFA RFGPTAHENN RNVMVKSWLE EKLQLDVTIP
101: GISGWLSNSG SLKRSIESAS HGAPARAASQ SIFITHGICD SVPHPCDCGE EAVLSLREAG FRDVKFTPFA RFGPTAHENN RNVMVKSWLE EKLQLDVTIP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.