Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00167 | Canola | cytosol | 75.42 | 92.71 |
| AT3G27100.1 | Thale cress | cytosol | 78.81 | 80.87 |
| Bra039092.1-P | Field mustard | cytosol | 93.22 | 67.48 |
| CDY13681 | Canola | cytosol, mitochondrion | 55.08 | 65.0 |
| Solyc02g068110.2.1 | Tomato | cytosol | 38.98 | 64.79 |
| KRH06944 | Soybean | cytosol | 61.86 | 64.04 |
| KRG94523 | Soybean | cytosol | 61.02 | 63.16 |
| KXG34000 | Sorghum | cytosol | 59.32 | 62.5 |
| TraesCS3B01G464700.1 | Wheat | cytosol, nucleus, plastid | 58.47 | 59.48 |
| Os01t0920200-01 | Rice | cytosol | 56.78 | 59.29 |
| TraesCS3A01G427600.1 | Wheat | cytosol | 57.63 | 58.62 |
| TraesCS3D01G423200.1 | Wheat | cytosol, nucleus, plastid | 57.63 | 58.62 |
| Zm00001d012030_P003 | Maize | plastid | 56.78 | 56.3 |
| VIT_14s0068g02060.t01 | Wine grape | mitochondrion | 58.47 | 54.33 |
| CDY52397 | Canola | cytosol | 56.78 | 53.6 |
| PGSC0003DMT400017833 | Potato | cytosol | 50.85 | 46.88 |
| Zm00001d042340_P001 | Maize | mitochondrion | 54.24 | 46.04 |
| GSMUA_Achr8P00800_001 | Banana | cytosol | 58.47 | 41.07 |
| HORVU3Hr1G094220.7 | Barley | nucleus, plastid | 55.93 | 38.15 |
Protein Annotations
| Gene3D:1.10.246.140 | MapMan:15.3.4.2.3 | GO:A0A078G3Y8 | UniProt:A0A078G3Y8 | EnsemblPlants:CDY20061 | ProteinID:CDY20061 |
| ProteinID:CDY20061.1 | GO:GO:0000124 | GO:GO:0003674 | GO:GO:0003713 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006368 | GO:GO:0006406 | GO:GO:0006464 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016578 | GO:GO:0019538 | GO:GO:0045893 | GO:GO:0051028 |
| GO:GO:0070390 | GO:GO:0071819 | EnsemblPlantsGene:GSBRNA2T00009905001 | InterPro:IPR038212 | HAMAP:MF_03046 | PFAM:PF10163 |
| PANTHER:PTHR12514 | InterPro:TF_ENY2 | InterPro:TF_EnY2_sf | UniParc:UPI0004EE7F85 | : | : |
Description
BnaA09g01900DTranscription and mRNA export factor SUS1 [Source:UniProtKB/TrEMBL;Acc:A0A078G3Y8]
Coordinates
chrLK032102:+:661346..662868
Molecular Weight (calculated)
13508.3 Da
IEP (calculated)
6.804
GRAVY (calculated)
-0.694
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSVKHSAN RPPTPDEDVR DSPERDELTL GEIINIKLVE SGEKENLMEL VRDRLVESGW KDEMRIACRE HVKKKGRKDV TVDELIRVIT PKGRASVPDA
101: IKEELLDRIH NFIRSAAL
101: IKEELLDRIH NFIRSAAL
001: MKHSVNRPPT PDEDDVADGF EKDKVTLREI INVKLVESGE KENLMELVRD RLVECGWKDE MRIACREHVK KKGRKDVTVD ELIRVITPKG RASVPDSVKA
101: ELLNRIQNFI VSAAL
101: ELLNRIQNFI VSAAL
Arabidopsis Description
Transcription and mRNA export factor SUS1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.