Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00167 | Canola | cytosol | 72.17 | 86.46 |
| CDY20061 | Canola | cytosol, mitochondrion, nucleus | 80.87 | 78.81 |
| KRH06944 | Soybean | cytosol | 68.7 | 69.3 |
| Bra025249.1-P | Field mustard | cytosol | 68.7 | 68.7 |
| KRG94523 | Soybean | cytosol | 66.09 | 66.67 |
| Solyc02g068110.2.1 | Tomato | cytosol | 40.0 | 64.79 |
| Os01t0920200-01 | Rice | cytosol | 63.48 | 64.6 |
| CDY13681 | Canola | cytosol, mitochondrion | 55.65 | 64.0 |
| KXG34000 | Sorghum | cytosol | 61.74 | 63.39 |
| TraesCS3B01G464700.1 | Wheat | cytosol, nucleus, plastid | 60.87 | 60.34 |
| TraesCS3A01G427600.1 | Wheat | cytosol | 60.0 | 59.48 |
| TraesCS3D01G423200.1 | Wheat | cytosol, nucleus, plastid | 59.13 | 58.62 |
| Bra039092.1-P | Field mustard | cytosol | 81.74 | 57.67 |
| VIT_14s0068g02060.t01 | Wine grape | mitochondrion | 63.48 | 57.48 |
| Zm00001d012030_P003 | Maize | plastid | 59.13 | 57.14 |
| CDY52397 | Canola | cytosol | 52.17 | 48.0 |
| Zm00001d042340_P001 | Maize | mitochondrion | 56.52 | 46.76 |
| PGSC0003DMT400017833 | Potato | cytosol | 51.3 | 46.09 |
| GSMUA_Achr8P00800_001 | Banana | cytosol | 60.87 | 41.67 |
| HORVU3Hr1G094220.7 | Barley | nucleus, plastid | 56.52 | 37.57 |
Protein Annotations
| Gene3D:1.10.246.140 | MapMan:15.3.4.2.3 | EntrezGene:822329 | EMBL:AB026649 | ProteinID:AEE77266.1 | EMBL:AK175619 |
| ArrayExpress:AT3G27100 | EnsemblPlantsGene:AT3G27100 | RefSeq:AT3G27100 | TAIR:AT3G27100 | RefSeq:AT3G27100-TAIR-G | EnsemblPlants:AT3G27100.1 |
| TAIR:AT3G27100.1 | EMBL:BT010609 | GO:GO:0000124 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0003713 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 |
| GO:GO:0005643 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0006368 | GO:GO:0006406 | GO:GO:0006464 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016043 | GO:GO:0016569 |
| GO:GO:0016578 | GO:GO:0016973 | GO:GO:0019538 | GO:GO:0045893 | GO:GO:0051028 | GO:GO:0070390 |
| GO:GO:0071819 | InterPro:IPR038212 | HAMAP:MF_03046 | RefSeq:NP_189346.2 | PFAM:PF10163 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR12514 | UniProt:Q6NQ54 | InterPro:TF_ENY2 | InterPro:TF_EnY2_sf | UniParc:UPI0000196E5F | : |
Description
Transcription and mRNA export factor SUS1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ54]
Coordinates
chr3:-:9994481..9996115
Molecular Weight (calculated)
13107.9 Da
IEP (calculated)
7.423
GRAVY (calculated)
-0.542
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHSVNRPPT PDEDDVADGF EKDKVTLREI INVKLVESGE KENLMELVRD RLVECGWKDE MRIACREHVK KKGRKDVTVD ELIRVITPKG RASVPDSVKA
101: ELLNRIQNFI VSAAL
101: ELLNRIQNFI VSAAL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.