CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13835	Soybean	cytosol	79.68	97.11
KRH47681	Soybean	endoplasmic reticulum, nucleus	64.64	79.03
KRH06257	Soybean	nucleus	64.38	78.46
CDY55242	Canola	cytosol	50.66	77.73
Bra032101.1-P	Field mustard	cytosol	57.52	74.66
CDY46144	Canola	cytosol	57.52	74.66
CDY20307	Canola	cytosol	57.26	74.32
HORVU6Hr1G031720.2	Barley	cytosol	15.3	73.42
CDX72910	Canola	cytosol	55.94	72.6
CDX96403	Canola	cytosol	55.94	72.6
CDX68268	Canola	cytosol, extracellular	54.88	72.22
CDY50642	Canola	cytosol	54.88	72.22
Solyc06g072120.2.1	Tomato	nucleus	55.94	71.62
AT1G72370.1	Thale cress	cytosol	56.2	71.48
CDX82152	Canola	cytosol	55.67	71.28
Bra008030.1-P	Field mustard	cytosol	55.67	71.28
CDY03641	Canola	cytosol	55.41	71.19
Bra003882.1-P	Field mustard	cytosol	54.09	71.18
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	55.94	70.9
VIT_09s0002g00610.t01	Wine grape	cytosol	58.31	70.83
PGSC0003DMT400039497	Potato	cytosol	54.88	69.33
Solyc03g019780.2.1	Tomato	nucleus	54.35	69.13
Bra016062.1-P	Field mustard	cytosol	43.27	68.91
Os03t0402400-00	Rice	nucleus	33.25	67.74
CDY42439	Canola	cytosol	37.47	54.41
KRH66387	Soybean	peroxisome	9.23	53.85
KRG88565	Soybean	cytosol	11.35	48.31
OQU92440	Sorghum	plastid	20.84	43.17

Protein Annotations

EntrezGene:100786575	MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A0R0IR73	EMBL:ACUP02004870	EnsemblPlantsGene:GLYMA_08G159800
GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	EnsemblPlants:KRH43602	ProteinID:KRH43602	ProteinID:KRH43602.1	HAMAP:MF_03015
PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2
InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012
UniParc:UPI00023C5E08	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:12386630..12389480

Molecular Weight (calculated)

41559.3 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.390

Length

379 amino acids

Sequence
(BLAST)

001: MTWPRGPNVN AERALTSFLN VRVLSLSLAR PFLHNSREPS ETLISQTFRG HPATPKPPPP LLPPGAMAAT DSSAASSRQL SQRETDIQMM LAADVHLGTK
101: NCDFQMERYV FKRRTDGIYI INLGKTWEKL QLAARIIVAI ENPQDIIVQS ARPYGQRAVL KFAQYTGAHA IAGRHTPGTF TNQMQQSYNE PRLLILTDPR
201: TDHQPIKEGA LGNIPTIAFC DTDSPMRYVD VGIPANNKGK HSIGCLFWLL ARMVLQMRGT IRPGHKWDVM VDLFFYREPE EAKQQEEDEA PPAQDYAISD
301: FNAAGIGSFP ATDGQWPAAV EQPWTEEAPQ PISAAPTNWT PEAAAAGDWG EAVPAPAPAP VPQAGAPPAQ AFPPATGWD

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.