Factsheet for PGSC0003DMT400069333

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072120.2.1	Tomato	nucleus	95.32	96.28
PGSC0003DMT400039497	Potato	cytosol	81.27	81.0
CDY55242	Canola	cytosol	62.21	75.3
HORVU6Hr1G031720.2	Barley	cytosol	19.4	73.42
Bra032101.1-P	Field mustard	cytosol	71.57	73.29
CDY46144	Canola	cytosol	71.57	73.29
CDX72910	Canola	cytosol	71.24	72.95
CDY20307	Canola	cytosol	71.24	72.95
TraesCS4A01G006000.1	Wheat	cytosol	72.91	72.67
CDX68268	Canola	cytosol, extracellular	69.9	72.57
CDX96403	Canola	cytosol	70.57	72.26
CDY50642	Canola	cytosol	69.57	72.22
KRH47681	Soybean	endoplasmic reticulum, nucleus	74.58	71.94
KRH06257	Soybean	nucleus	74.58	71.7
Bra003882.1-P	Field mustard	cytosol	68.9	71.53
CDY03641	Canola	cytosol	70.23	71.19
Bra008030.1-P	Field mustard	cytosol	70.23	70.95
CDX82152	Canola	cytosol	70.23	70.95
VIT_09s0002g00610.t01	Wine grape	cytosol	73.91	70.83
TraesCS4D01G298000.1	Wheat	cytosol	72.58	70.45
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	72.58	70.45
Zm00001d048346_P001	Maize	plastid	72.24	69.68
Zm00001d048256_P002	Maize	plasma membrane	71.24	69.16
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	70.23	69.08
TraesCS2D01G175700.1	Wheat	cytosol	70.23	69.08
Os03t0402400-00	Rice	nucleus	42.81	68.82
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	69.9	68.75
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	70.57	68.73
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	69.9	68.52
Zm00001d048253_P001	Maize	plastid	70.57	68.51
Zm00001d027919_P001	Maize	plastid	70.9	68.39
Bra016062.1-P	Field mustard	cytosol	54.18	68.07
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	66.89	67.8
GSMUA_Achr1P21820_001	Banana	cytosol	67.56	67.79
KRH13835	Soybean	cytosol	70.23	67.52
Zm00001d027527_P001	Maize	mitochondrion	70.9	56.08
KRH43602	Soybean	endoplasmic reticulum	70.9	55.94
GSMUA_Achr5P22560_001	Banana	cytosol	14.72	53.66
GSMUA_AchrUn_...	Banana	vacuole	60.87	53.53
CDY42439	Canola	cytosol	46.15	52.87
AT3G04770.1	Thale cress	cytosol	58.19	52.41
OQU92440	Sorghum	plastid	26.76	43.72

Protein Annotations

EntrezGene:102601481	MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:M1CKB2
HAMAP:MF_03015	PFAM:PF00318	EnsemblPlantsGene:PGSC0003DMG400026970	PGSC:PGSC0003DMG400026970	EnsemblPlants:PGSC0003DMT400069333	PRINTS:PR00395
ScanProsite:PS00962	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS
InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI000294DBEC
SEG:seg	:	:	:	:	:

Description

P40 [Source:PGSC_GENE;Acc:PGSC0003DMG400026970]

Coordinates

chr6:-:52914694..52916993

Molecular Weight (calculated)

32495.4 Da

IEP (calculated)

4.695

GRAVY (calculated)

-0.277

Length

299 amino acids

Sequence
(BLAST)

001: MATQDVRTLS TKEADIQMML AAEVHLGTKN CDFQMERYAF KRRNDGIYII NLGKTWEKLQ MAARVIVAIE NPQDIIVQSA RPYGQRAVLK FAQYTGAHAI
101: AGRHTPGTFT NQLQTSYSEP RLLILTDPRT DHQPIKEAAL GNIPTIAFCD TDSPMRYVDI GIPANNKGKH SIGVLFWILA RMVLQMRGAI NQGPKWDVMV
201: DLFFYREPEE AKEQEEEAPA IADYADYSAS AALGGDWTSS QIPEAQWTAD AAAPPVGGGW AGDGGISAAD GGWDAAAPPA PVPLPVPDVP PTSGATGWE

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.