CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G031720.2	Barley	cytosol	27.32	63.29
Os03t0402400-00	Rice	nucleus	33.33	32.8
CDY55242	Canola	cytosol	39.89	29.55
KXG29217	Sorghum	cytosol	48.09	28.95
KXG36688	Sorghum	cytosol	48.09	28.76
EER99703	Sorghum	cytosol	48.09	28.76
KRH47681	Soybean	endoplasmic reticulum, nucleus	45.9	27.1
Solyc06g072120.2.1	Tomato	nucleus	43.72	27.03
KRH06257	Soybean	nucleus	45.9	27.01
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	43.72	26.76
Bra032101.1-P	Field mustard	cytosol	42.62	26.71
CDY20307	Canola	cytosol	42.62	26.71
CDY46144	Canola	cytosol	42.62	26.71
CDX96403	Canola	cytosol	41.53	26.03
PGSC0003DMT400039497	Potato	cytosol	42.62	26.0
VIT_09s0002g00610.t01	Wine grape	cytosol	44.26	25.96
Solyc03g019780.2.1	Tomato	nucleus	42.08	25.84
KRH13835	Soybean	cytosol	43.17	25.4
CDX68268	Canola	cytosol, extracellular	39.89	25.35
Bra003882.1-P	Field mustard	cytosol	39.89	25.35
CDX72910	Canola	cytosol	40.44	25.34
CDY03641	Canola	cytosol	40.44	25.08
CDY50642	Canola	cytosol	39.34	25.0
CDX82152	Canola	cytosol	40.44	25.0
Bra008030.1-P	Field mustard	cytosol	40.44	25.0
CDY42439	Canola	cytosol	31.69	22.22
KRH43602	Soybean	endoplasmic reticulum	43.17	20.84
AT3G04770.1	Thale cress	cytosol	34.43	18.98
Bra016062.1-P	Field mustard	cytosol	22.95	17.65

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A1Z5S917	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
EnsemblPlants:OQU92440	ProteinID:OQU92440	ProteinID:OQU92440.1	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2_euk/arc
InterPro:Ribosomal_S2_flav_dom_sf	EnsemblPlantsGene:SORBI_3001G344450	SUPFAM:SSF52313	UniParc:UPI000B8B9BDB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:63290450..63292874

Molecular Weight (calculated)

20627.1 Da

IEP (calculated)

5.063

GRAVY (calculated)

-0.487

Length

183 amino acids

Sequence
(BLAST)

001: MDFPRAPCQN ARYPRPKPTS PSRQRRRRPQ RTVAEVQAGG EEEGFSEDLM FFVVFSSSTL ASPEKLHLAA RVTVATEDPQ DIIVQFARPY GRRAVLKFVQ
101: YTGANAIACR HILDTFTNQL QTSFSEPCLL VVTNPKTDHH VDLFFHWDPV ETNKLEEEEA PVALDYAAVA DYDAPSSDNW GAE

Best Arabidopsis Sequence Match ( AT1G72370.2 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSADGGWE AAAPPSGAPA AGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.