CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47681	Soybean	endoplasmic reticulum, nucleus	95.5	95.81
CDY55242	Canola	cytosol	61.74	77.73
KRH13835	Soybean	cytosol	77.49	77.49
HORVU6Hr1G031720.2	Barley	cytosol	19.61	77.22
Bra032101.1-P	Field mustard	cytosol	71.06	75.68
CDY46144	Canola	cytosol	71.06	75.68
CDY20307	Canola	cytosol	70.74	75.34
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	71.7	74.58
VIT_09s0002g00610.t01	Wine grape	cytosol	74.6	74.36
Solyc06g072120.2.1	Tomato	nucleus	70.74	74.32
CDX96403	Canola	cytosol	69.45	73.97
CDX72910	Canola	cytosol	69.45	73.97
CDY50642	Canola	cytosol	68.17	73.61
CDX68268	Canola	cytosol, extracellular	68.17	73.61
Solyc03g019780.2.1	Tomato	nucleus	70.42	73.49
Bra008030.1-P	Field mustard	cytosol	69.77	73.31
CDY03641	Canola	cytosol	69.45	73.22
CDX82152	Canola	cytosol	69.45	72.97
Bra003882.1-P	Field mustard	cytosol	67.52	72.92
PGSC0003DMT400039497	Potato	cytosol	69.45	72.0
AT1G72370.1	Thale cress	cytosol	68.81	71.81
Os03t0402400-00	Rice	nucleus	42.44	70.97
Bra016062.1-P	Field mustard	cytosol	52.73	68.91
KRH66387	Soybean	peroxisome	13.5	64.62
KRH43602	Soybean	endoplasmic reticulum	78.46	64.38
KRG88565	Soybean	cytosol	17.68	61.8
CDY42439	Canola	cytosol	46.62	55.56
OQU92440	Sorghum	plastid	27.01	45.9

Protein Annotations

EntrezGene:100805318	MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A0R0FJR0	EMBL:ACUP02009821	EnsemblPlantsGene:GLYMA_16G012200
GO:GO:0000028	GO:GO:0000447	GO:GO:0000461	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006407	GO:GO:0006412	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	GO:GO:0030686	EnsemblPlants:KRH06257	ProteinID:KRH06257	ProteinID:KRH06257.1	HAMAP:MF_03015
PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2
InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012
UniParc:UPI000189D1B4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:1034839..1036944

Molecular Weight (calculated)

34053.4 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.300

Length

311 amino acids

Sequence
(BLAST)

001: MATTTNAAAA PPRQLSQKEA DIQMMLAADV HLGTKNCDFQ MERYIFKRRN DGIYIINLGK TWEKLQLAAR VIVAIENPQD IIVQSARPYG QRAVLKFAQY
101: TGAHAIAGRH TPGTFTNQLQ TSFSEPRLLI LTDPRTDHQP IKEAALGNIP TIAFCDTDSP MRYVDIGIPA NNKGKHSIGC LFWLLARMVL QMRGTIRPGL
201: KWDVMVDLFF YREPEEAKQQ EEEEAPAGDY AITDFNAGAI AADGQWPGTI DQSWSDAVPQ PIPAAPGVNW GAPAEAPAAV AEGDWGEAVP PPQQIPVPPS
301: GIDSVQPTGW E

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.