Factsheet for VIT_09s0002g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G031720.2	Barley	cytosol	19.55	77.22
KRH47681	Soybean	endoplasmic reticulum, nucleus	75.0	75.48
Solyc06g072120.2.1	Tomato	nucleus	71.47	75.34
TraesCS4A01G006000.1	Wheat	cytosol	71.79	74.67
KRH06257	Soybean	nucleus	74.36	74.6
CDX68268	Canola	cytosol, extracellular	68.59	74.31
CDY55242	Canola	cytosol	58.65	74.09
CDY46144	Canola	cytosol	69.23	73.97
CDY20307	Canola	cytosol	69.23	73.97
Bra032101.1-P	Field mustard	cytosol	69.23	73.97
CDY50642	Canola	cytosol	68.27	73.96
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	70.83	73.91
Solyc03g019780.2.1	Tomato	nucleus	70.19	73.49
Bra003882.1-P	Field mustard	cytosol	67.63	73.26
CDX96403	Canola	cytosol	68.27	72.95
TraesCS4D01G298000.1	Wheat	cytosol	71.79	72.73
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	71.79	72.73
Zm00001d048253_P001	Maize	plastid	71.79	72.73
CDX82152	Canola	cytosol	68.91	72.64
CDX72910	Canola	cytosol	67.95	72.6
CDY03641	Canola	cytosol	68.59	72.54
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	70.83	72.46
Zm00001d048256_P002	Maize	plasma membrane	71.47	72.4
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	71.15	72.31
Bra008030.1-P	Field mustard	cytosol	68.59	72.3
Zm00001d048346_P001	Maize	plastid	71.79	72.26
AT1G72370.1	Thale cress	cytosol	68.91	72.15
PGSC0003DMT400039497	Potato	cytosol	69.23	72.0
TraesCS2D01G175700.1	Wheat	cytosol	69.87	71.71
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	69.87	71.71
Zm00001d027919_P001	Maize	plastid	71.15	71.61
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	69.55	71.38
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	67.31	71.19
KRH13835	Soybean	cytosol	70.19	70.42
Os03t0402400-00	Rice	nucleus	41.67	69.89
GSMUA_Achr1P21820_001	Banana	cytosol	66.35	69.46
Bra016062.1-P	Field mustard	cytosol	52.56	68.91
GSMUA_Achr5P22560_001	Banana	cytosol	15.71	59.76
Zm00001d027527_P001	Maize	mitochondrion	71.15	58.73
KRH43602	Soybean	endoplasmic reticulum	70.83	58.31
GSMUA_AchrUn_...	Banana	vacuole	61.54	56.47
CDY42439	Canola	cytosol	46.15	55.17
AT3G04770.1	Thale cress	cytosol	58.65	55.12
OQU92440	Sorghum	plastid	25.96	44.26

Protein Annotations

EntrezGene:100254883	wikigene:100254883	MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A5BUU4	EMBL:AM472018
ProteinID:CAN61790	ProteinID:CAN61790.1	ProteinID:CCB59253	ProteinID:CCB59253.1	UniProt:F6HXP6	EMBL:FN596494
GO:GO:0000028	GO:GO:0000447	GO:GO:0000461	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006407	GO:GO:0006412	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	GO:GO:0030686	EntrezGene:LOC100254883	wikigene:LOC100254883	HAMAP:MF_03015	PFAM:PF00318
PRINTS:PR00395	ScanProsite:PS00962	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2
InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGR:TC51786
TIGRFAMs:TIGR01012	UniParc:UPI0001521DBC	ArrayExpress:VIT_09s0002g00610	EnsemblPlantsGene:VIT_09s0002g00610	EnsemblPlants:VIT_09s0002g00610.t01	unigene:Vvi.7589
RefSeq:XP_002268664	RefSeq:XP_002268664.1	SEG:seg	:	:	:

Description

40S ribosomal protein SA [Source:UniProtKB/Swiss-Prot;Acc:A5BUU4]

Coordinates

chr9:-:427140..429896

Molecular Weight (calculated)

33910.6 Da

IEP (calculated)

5.367

GRAVY (calculated)

-0.198

Length

312 amino acids

Sequence
(BLAST)

001: MATPTRALSQ KEQDIQMMLA AEVHLGTKNC NFQMERYVFK RRNDGIYIIN LGKTWEKLQL AARVIVAIEN PKDIIVQSAR PYGQRAVLKF AQYTGAHAIA
101: GRHTPGTFTN QLQTSFSEPR LLILTDPRTD HQPIKEAALG NIPTIAFCDT DSPMRYVDIG IPANNKGKHS IGCLFWLLAR MVLQMRRTIA PGHKWDVMVD
201: LFFYREPEEP KEQEGDEVVA APDYGITDYQ ATALGGLGGG DWGAPITDAP QWGADVPAVA PIPAVPGSNW GDAAPMPSAV PIATDGWDAA AAPPVAVPPP
301: VVEGVPPPAG WE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.