Factsheet for Zm00001d006871_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99703	Sorghum	cytosol	93.16	93.46
KXG36688	Sorghum	cytosol	91.86	92.16
KXG29217	Sorghum	cytosol	90.23	91.12
Os07t0616600-02	Rice	nucleus	85.02	85.57
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	82.08	82.89
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	81.76	82.57
TraesCS2D01G175700.1	Wheat	cytosol	81.43	82.24
Zm00001d048256_P002	Maize	plasma membrane	76.87	76.62
Zm00001d048253_P001	Maize	plastid	76.55	76.3
Zm00001d048346_P001	Maize	plastid	76.87	76.13
Zm00001d027919_P001	Maize	plastid	75.24	74.52
CDY55242	Canola	cytosol	59.93	74.49
Solyc06g072120.2.1	Tomato	nucleus	69.38	71.96
CDY46144	Canola	cytosol	68.4	71.92
Bra032101.1-P	Field mustard	cytosol	68.4	71.92
CDX82152	Canola	cytosol	69.06	71.62
Bra008030.1-P	Field mustard	cytosol	69.06	71.62
CDY20307	Canola	cytosol	68.08	71.58
CDX68268	Canola	cytosol, extracellular	67.1	71.53
CDY03641	Canola	cytosol	68.73	71.53
CDX72910	Canola	cytosol	67.75	71.23
CDY50642	Canola	cytosol	66.78	71.18
VIT_09s0002g00610.t01	Wine grape	cytosol	72.31	71.15
CDX96403	Canola	cytosol	67.43	70.89
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	68.73	70.57
Bra003882.1-P	Field mustard	cytosol	66.12	70.49
AT1G72370.1	Thale cress	cytosol	68.4	70.47
PGSC0003DMT400039497	Potato	cytosol	68.4	70.0
Solyc03g019780.2.1	Tomato	nucleus	67.75	69.8
Bra016062.1-P	Field mustard	cytosol	51.47	66.39
Zm00001d027527_P001	Maize	mitochondrion	76.55	62.17
CDY42439	Canola	cytosol	45.93	54.02
AT3G04770.1	Thale cress	cytosol	57.98	53.61

Protein Annotations

EntrezGene:100283431	MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	InterPro:40S_SA_C	UniProt:B4FZ84	EMBL:BT042422
GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	HAMAP:MF_03015	ProteinID:ONM25369.1	PFAM:PF00318	PFAM:PF16122
PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS
InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI00017B7A2C
EnsemblPlantsGene:Zm00001d006871	EnsemblPlants:Zm00001d006871_P001	EnsemblPlants:Zm00001d006871_T001	SEG:seg	:	:

Description

40S ribosomal protein Sa-1

Coordinates

chr2:-:218309398..218312057

Molecular Weight (calculated)

33030.1 Da

IEP (calculated)

4.775

GRAVY (calculated)

-0.194

Length

307 amino acids

Sequence
(BLAST)

001: MAAAPAGGGP RALSQREQDI QMMLAADVHL GTKNCDFQVE RYVYKRRTDG IYIINLGKTW DKLQLAARVI VAIENPQDII VQSARPYGQR AVLKFAQYTG
101: AHAIAGRHTP GTFTNQLQTS FSEPRLLILT DPRTDHQPIK ESALGNIPTI AFCDTDSPMR YVDIGIPANN KGKQSIGCLF WLLARMVLQM RGTILPGHKW
201: DIMVDLFFYR DPEEAKQLEE EEALVAPDYG AVAEYTAPGA DNWGGEWGAG EAAAPAASIP AAGADWAAAP APPADGVWDA AVAPPPAAAP GWEQGAAPVA
301: ASTPTWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.