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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400039497 Potato cytosol 95.64 95.0
Solyc06g072120.2.1 Tomato nucleus 81.88 82.43
CDY55242 Canola cytosol 63.09 76.11
CDX72910 Canola cytosol 71.81 73.29
CDX68268 Canola cytosol, extracellular 70.81 73.26
Bra032101.1-P Field mustard cytosol 71.48 72.95
CDY46144 Canola cytosol 71.48 72.95
Bra003882.1-P Field mustard cytosol 70.47 72.92
CDY50642 Canola cytosol 70.47 72.92
CDX96403 Canola cytosol 71.14 72.6
CDY20307 Canola cytosol 71.14 72.6
CDY03641 Canola cytosol 71.14 71.86
Bra008030.1-P Field mustard cytosol 70.81 71.28
CDX82152 Canola cytosol 70.81 71.28
KRH06257 Soybean nucleus 73.49 70.42
VIT_09s0002g00610.t01 Wine grape cytosol 73.49 70.19
TraesCS4A01G006000.1 Wheat cytosol 70.47 70.0
Bra016062.1-P Field mustard cytosol 55.7 69.75
TraesCS2D01G175700.1 Wheat cytosol 71.14 69.74
TraesCS2A01G168300.1 Wheat cytosol, nucleus, plastid 71.14 69.74
KRH47681 Soybean endoplasmic reticulum, nucleus 72.48 69.68
HORVU6Hr1G031720.2 Barley cytosol 18.46 69.62
GSMUA_AchrUn_... Banana cytosol, plasma membrane 68.79 69.49
Zm00001d048256_P002 Maize plasma membrane 71.81 69.48
TraesCS2B01G194400.1 Wheat cytosol, golgi, unclear 70.81 69.41
Zm00001d048253_P001 Maize plastid 71.14 68.83
TraesCS4D01G298000.1 Wheat cytosol 70.81 68.51
TraesCS4B01G299100.1 Wheat cytosol, extracellular, golgi, nucleus, unclear 70.81 68.51
Zm00001d027919_P001 Maize plastid 71.14 68.39
GSMUA_Achr8P30490_001 Banana cytosol, unclear 69.8 68.2
Zm00001d048346_P001 Maize plastid 70.81 68.06
Zm00001d006871_P001 Maize cytosol, extracellular, plastid 69.8 67.75
Os03t0402400-00 Rice nucleus 41.95 67.2
GSMUA_Achr1P21820_001 Banana cytosol 66.44 66.44
KRH13835 Soybean cytosol 68.79 65.92
Zm00001d027527_P001 Maize mitochondrion 72.15 56.88
KRH43602 Soybean endoplasmic reticulum 69.13 54.35
CDY42439 Canola cytosol 46.64 53.26
GSMUA_AchrUn_... Banana vacuole 60.74 53.24
AT3G04770.1 Thale cress cytosol 57.72 51.81
GSMUA_Achr5P22560_001 Banana cytosol 13.42 48.78
OQU92440 Sorghum plastid 25.84 42.08
Protein Annotations
MapMan:17.1.3.1.1Gene3D:3.40.50.10490GO:GO:0000028GO:GO:0000447GO:GO:0000461GO:GO:0003674
GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006407GO:GO:0006412GO:GO:0006810
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015935GO:GO:0016043
GO:GO:0019538GO:GO:0022627GO:GO:0030529GO:GO:0030686UniProt:K4BEV0HAMAP:MF_03015
PFAM:PF00318PRINTS:PR00395ScanProsite:PS00962ScanProsite:PS00963PANTHER:PTHR11489PANTHER:PTHR11489:SF15
InterPro:Ribosomal_S2InterPro:Ribosomal_S2_CSInterPro:Ribosomal_S2_eukInterPro:Ribosomal_S2_euk/arcInterPro:Ribosomal_S2_flav_dom_sfSUPFAM:SSF52313
EnsemblPlantsGene:Solyc03g019780.2EnsemblPlants:Solyc03g019780.2.1TIGRFAMs:TIGR01012UniParc:UPI000276871DSEG:seg:
Description
40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:K4BEV0]
Coordinates
chr3:+:61379181..61381390
Molecular Weight (calculated)
32437.3 Da
IEP (calculated)
4.784
GRAVY (calculated)
-0.260
Length
298 amino acids
Sequence
(BLAST)
001: MAAITQQPRT LTTKEADIQL MLAAEVHLGT KNCDFQMERY VFKRRNDGIY IINAGKTWDK LHMAARVIVS IENPQDIIVQ SARPYGQRAV LKFAQYTGAH
101: AIAGRHTPGT FTNQLQTSYS EPRLLILTDP RTDHQPIKEA ALGNIPTIAF CDTDSPMRYV DIGIPANNKG KHSIGVLFWI LARMVLQMRG TISPGPKWDV
201: MVDLFFYREP EEAKEQQDEE VPAIADYAEY GGAALGGDWT SSQIPDAQWA ADGATSVPAA TGDWSGDAVV EGGWDAAAAP PAGVPEVTPA PAAATGWE
Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)
001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE
Arabidopsis Description
RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.