Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048256_P002 | Maize | plasma membrane | 90.65 | 91.23 |
| Zm00001d027919_P001 | Maize | plastid | 90.32 | 90.32 |
| Zm00001d048253_P001 | Maize | plastid | 88.39 | 88.96 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 84.19 | 84.74 |
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 84.19 | 84.74 |
| TraesCS4A01G006000.1 | Wheat | cytosol | 80.0 | 82.67 |
| Os03t0182600-02 | Rice | cytosol, plasma membrane, plastid | 81.29 | 82.62 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 76.13 | 76.87 |
| Zm00001d027527_P001 | Maize | mitochondrion | 91.29 | 74.87 |
| Solyc06g072120.2.1 | Tomato | nucleus | 71.29 | 74.66 |
| PGSC0003DMT400069333 | Potato | cytosol, mitochondrion | 69.68 | 72.24 |
| CDY55242 | Canola | cytosol | 57.42 | 72.06 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 72.26 | 71.79 |
| CDY46144 | Canola | cytosol | 67.1 | 71.23 |
| Bra032101.1-P | Field mustard | cytosol | 67.1 | 71.23 |
| CDY20307 | Canola | cytosol | 66.77 | 70.89 |
| CDY03641 | Canola | cytosol | 67.42 | 70.85 |
| Solyc03g019780.2.1 | Tomato | nucleus | 68.06 | 70.81 |
| CDY50642 | Canola | cytosol | 65.48 | 70.49 |
| CDX68268 | Canola | cytosol, extracellular | 65.48 | 70.49 |
| CDX82152 | Canola | cytosol | 67.1 | 70.27 |
| Bra008030.1-P | Field mustard | cytosol | 67.1 | 70.27 |
| Bra003882.1-P | Field mustard | cytosol | 64.84 | 69.79 |
| CDX72910 | Canola | cytosol | 65.48 | 69.52 |
| CDX96403 | Canola | cytosol | 65.16 | 69.18 |
| PGSC0003DMT400039497 | Potato | cytosol | 66.77 | 69.0 |
| AT1G72370.1 | Thale cress | cytosol | 66.13 | 68.79 |
| Bra016062.1-P | Field mustard | cytosol | 49.68 | 64.71 |
| HORVU4Hr1G077240.1 | Barley | cytosol | 81.94 | 63.66 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 14.84 | 56.1 |
| AT3G04770.1 | Thale cress | cytosol | 58.39 | 54.52 |
| CDY42439 | Canola | cytosol | 43.87 | 52.11 |
| KRH66387 | Soybean | peroxisome | 10.32 | 49.23 |
| KRG88565 | Soybean | cytosol | 13.55 | 47.19 |
Protein Annotations
| EntrezGene:100273082 | MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | ProteinID:AQL09467.1 | UniProt:B4FSQ4 | EMBL:BT040142 |
| GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0022627 | GO:GO:0030529 | HAMAP:MF_03015 | PFAM:PF00318 | PRINTS:PR00395 | ScanProsite:PS00963 |
| PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | InterPro:Ribosomal_S2 | InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk | InterPro:Ribosomal_S2_euk/arc |
| InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 | UniParc:UPI00017B78D8 | EnsemblPlantsGene:Zm00001d048346 | EnsemblPlants:Zm00001d048346_P001 |
| EnsemblPlants:Zm00001d048346_T001 | SEG:seg | : | : | : | : |
Description
acidic ribosomal protein P40 acidic ribosomal protein P40
Coordinates
chr9:-:154820912..154823371
Molecular Weight (calculated)
33649.8 Da
IEP (calculated)
4.690
GRAVY (calculated)
-0.265
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAGGGAV RALSQKEQDI QMMLAADVHL GTKNCDFQME RYAFKRRTDG IYIINLGKTW EKLQLAARVI VAIENPQDII VQSARPYGQR AVLKFAQYTG
101: AHAIAGRHTP GTFTNQLQTS FSEPRLLILT DPRTDHQPIK ESALGNIPTI AFCDTDSPMR YVDIGIPANN KGRNSIGCLF WLLARMVLQM RGTILPGHKW
201: EVMVDLFFYR DPEEAKEQEE EAAVAPEFAA ITDYQGADQW GGDQWTSDVT APPVAPTGAD WGAAPAPVPT GDGWDQAGAP APVVDGTVPP LVAPTGWDQA
301: APPPTAQGWE
101: AHAIAGRHTP GTFTNQLQTS FSEPRLLILT DPRTDHQPIK ESALGNIPTI AFCDTDSPMR YVDIGIPANN KGRNSIGCLF WLLARMVLQM RGTILPGHKW
201: EVMVDLFFYR DPEEAKEQEE EAAVAPEFAA ITDYQGADQW GGDQWTSDVT APPVAPTGAD WGAAPAPVPT GDGWDQAGAP APVVDGTVPP LVAPTGWDQA
301: APPPTAQGWE
001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
Arabidopsis Description
RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.