Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G031720.2 | Barley | cytosol | 18.07 | 75.95 |
| Os03t0402400-00 | Rice | nucleus | 36.45 | 65.05 |
| AT1G72370.1 | Thale cress | cytosol | 55.12 | 61.41 |
| TraesCS4A01G006000.1 | Wheat | cytosol | 53.92 | 59.67 |
| Zm00001d048256_P002 | Maize | plasma membrane | 54.82 | 59.09 |
| Zm00001d048253_P001 | Maize | plastid | 54.82 | 59.09 |
| Solyc06g072120.2.1 | Tomato | nucleus | 52.41 | 58.78 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 55.12 | 58.65 |
| Zm00001d048346_P001 | Maize | plastid | 54.52 | 58.39 |
| Zm00001d027919_P001 | Maize | plastid | 54.52 | 58.39 |
| PGSC0003DMT400069333 | Potato | cytosol, mitochondrion | 52.41 | 58.19 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 53.61 | 57.98 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane | 51.51 | 57.97 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 53.01 | 57.89 |
| TraesCS2D01G175700.1 | Wheat | cytosol | 53.01 | 57.89 |
| TraesCS2B01G194400.1 | Wheat | cytosol, golgi, unclear | 53.01 | 57.89 |
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 53.61 | 57.79 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 53.61 | 57.79 |
| Solyc03g019780.2.1 | Tomato | nucleus | 51.81 | 57.72 |
| PGSC0003DMT400039497 | Potato | cytosol | 52.11 | 57.67 |
| GSMUA_Achr8P30490_001 | Banana | cytosol, unclear | 52.11 | 56.72 |
| GSMUA_Achr1P21820_001 | Banana | cytosol | 49.4 | 55.03 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 13.55 | 54.88 |
| Zm00001d027527_P001 | Maize | mitochondrion | 54.22 | 47.62 |
| GSMUA_AchrUn_... | Banana | vacuole | 44.28 | 43.24 |
| OQU92440 | Sorghum | plastid | 18.98 | 34.43 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | EntrezGene:819637 | ProteinID:AEE74133.1 | ArrayExpress:AT3G04770 | EnsemblPlantsGene:AT3G04770 |
| RefSeq:AT3G04770 | TAIR:AT3G04770 | RefSeq:AT3G04770-TAIR-G | EnsemblPlants:AT3G04770.1 | TAIR:AT3G04770.1 | Unigene:At.10372 |
| UniProt:F4J4W3 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0015935 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022626 | GO:GO:0022627 |
| GO:GO:0030529 | GO:GO:0042788 | HAMAP:MF_03015 | RefSeq:NP_850515.1 | PFAM:PF00318 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00395 | ScanProsite:PS00963 | PANTHER:PTHR11489 |
| PANTHER:PTHR11489:SF15 | Symbol:RPSAb | InterPro:Ribosomal_S2 | InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk | InterPro:Ribosomal_S2_euk/arc |
| InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 | UniParc:UPI0000196B0C | SEG:seg | : |
Description
RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
Coordinates
chr3:-:1309294..1310887
Molecular Weight (calculated)
37302.1 Da
IEP (calculated)
10.194
GRAVY (calculated)
-0.007
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVNSRNTI RTCVSPTPDK DLDLFLLCRW ICFSTGSPKK QSKRVMKKLK YRPIMEWLVV TSGPLLKYLM LHGLVKSNSQ FLLHLQLALP LLLDGRLLLF
301: QLLVGSKSSL ISLARTRLDV DLIFLFSRFG ED
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVNSRNTI RTCVSPTPDK DLDLFLLCRW ICFSTGSPKK QSKRVMKKLK YRPIMEWLVV TSGPLLKYLM LHGLVKSNSQ FLLHLQLALP LLLDGRLLLF
301: QLLVGSKSSL ISLARTRLDV DLIFLFSRFG ED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.