Factsheet for GSMUA_Achr1P21820_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	79.87	80.68
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	82.55	80.66
CDY55242	Canola	cytosol	61.07	73.68
GSMUA_AchrUn_...	Banana	vacuole	79.87	70.0
Solyc06g072120.2.1	Tomato	nucleus	68.46	68.92
Bra003882.1-P	Field mustard	cytosol	66.11	68.4
CDX68268	Canola	cytosol, extracellular	66.11	68.4
CDY50642	Canola	cytosol	65.77	68.06
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	67.79	67.56
CDY46144	Canola	cytosol	66.11	67.47
Bra032101.1-P	Field mustard	cytosol	66.11	67.47
Bra008030.1-P	Field mustard	cytosol	66.78	67.23
CDY20307	Canola	cytosol	65.77	67.12
CDY03641	Canola	cytosol	66.44	67.12
CDX82152	Canola	cytosol	66.44	66.89
CDX72910	Canola	cytosol	65.44	66.78
Solyc03g019780.2.1	Tomato	nucleus	66.44	66.44
CDX96403	Canola	cytosol	65.1	66.44
VIT_09s0002g00610.t01	Wine grape	cytosol	69.46	66.35
PGSC0003DMT400039497	Potato	cytosol	66.44	66.0
AT1G72370.1	Thale cress	cytosol	65.44	65.44
Bra016062.1-P	Field mustard	cytosol	51.68	64.71
CDY42439	Canola	cytosol	46.64	53.26
GSMUA_Achr5P22560_001	Banana	cytosol	13.76	50.0
AT3G04770.1	Thale cress	cytosol	55.03	49.4

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr1G21820_001	EnsemblPlants:GSMUA_Achr1P21820_001
EnsemblPlants:GSMUA_Achr1T21820_001	UniProt:M0S1Z0	HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963
PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc
InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI000294BCE9	SEG:seg	:

Description

40S ribosomal protein Sa-2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21820_001]

Coordinates

chr1:+:16374950..16378516

Molecular Weight (calculated)

32479.6 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.213

Length

298 amino acids

Sequence
(BLAST)

001: MLAAAVHLGA RNCDFQMERY VYKRRNDGVH IINLGKTWEK LQLAARVIVA IENPQDIIVQ SARPYGQRAV LKFAQYTGAH PIAGRHTPGT FTNQLQTSFS
101: EPRLLILTDP RTDHQPIKES ALGNIPTISF CDTDSPMRYV DIGIPANNKG KHSIGCLFWL LARMVLQMRG TIPLGRKWEV MVDLFFYRDP EEAKEQAEEE
201: APVAPDFGAV PDYGAMVPND QWTTEQWMPE VGAVPAAVPP VAGVEWTAGQ APVAADGWDA AAAPAPVPPP PVDVVAAPAG VPSGWEADQP TTAPSGWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.