Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| cytosol:
22313117
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g019780.2.1 | Tomato | nucleus | 95.0 | 95.64 |
| PGSC0003DMT400069333 | Potato | cytosol, mitochondrion | 81.0 | 81.27 |
| CDY55242 | Canola | cytosol | 62.0 | 75.3 |
| CDX72910 | Canola | cytosol | 70.67 | 72.6 |
| CDX68268 | Canola | cytosol, extracellular | 69.67 | 72.57 |
| Bra032101.1-P | Field mustard | cytosol | 70.33 | 72.26 |
| CDY46144 | Canola | cytosol | 70.33 | 72.26 |
| Bra003882.1-P | Field mustard | cytosol | 69.33 | 72.22 |
| CDY50642 | Canola | cytosol | 69.33 | 72.22 |
| CDX96403 | Canola | cytosol | 70.0 | 71.92 |
| CDY20307 | Canola | cytosol | 70.0 | 71.92 |
| CDY03641 | Canola | cytosol | 69.67 | 70.85 |
| Bra008030.1-P | Field mustard | cytosol | 69.33 | 70.27 |
| CDX82152 | Canola | cytosol | 69.33 | 70.27 |
| HORVU6Hr1G031720.2 | Barley | cytosol | 18.33 | 69.62 |
| KRH06257 | Soybean | nucleus | 72.0 | 69.45 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 72.0 | 69.23 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane | 68.0 | 69.15 |
| KRH47681 | Soybean | endoplasmic reticulum, nucleus | 71.33 | 69.03 |
| TraesCS4A01G006000.1 | Wheat | cytosol | 69.0 | 69.0 |
| Bra016062.1-P | Field mustard | cytosol | 54.67 | 68.91 |
| TraesCS2D01G175700.1 | Wheat | cytosol | 69.67 | 68.75 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 69.67 | 68.75 |
| TraesCS2B01G194400.1 | Wheat | cytosol, golgi, unclear | 69.33 | 68.42 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 70.0 | 68.4 |
| GSMUA_Achr8P30490_001 | Banana | cytosol, unclear | 69.33 | 68.2 |
| Zm00001d048256_P002 | Maize | plasma membrane | 69.33 | 67.53 |
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 69.0 | 67.21 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 69.0 | 67.21 |
| Zm00001d048253_P001 | Maize | plastid | 69.0 | 67.21 |
| Os03t0402400-00 | Rice | nucleus | 41.67 | 67.2 |
| Zm00001d027919_P001 | Maize | plastid | 69.0 | 66.77 |
| Zm00001d048346_P001 | Maize | plastid | 69.0 | 66.77 |
| GSMUA_Achr1P21820_001 | Banana | cytosol | 66.0 | 66.44 |
| KRH13835 | Soybean | cytosol | 68.67 | 66.24 |
| Zm00001d027527_P001 | Maize | mitochondrion | 69.67 | 55.29 |
| KRH43602 | Soybean | endoplasmic reticulum | 69.33 | 54.88 |
| CDY42439 | Canola | cytosol | 46.33 | 53.26 |
| GSMUA_AchrUn_... | Banana | vacuole | 60.33 | 53.24 |
| AT3G04770.1 | Thale cress | cytosol | 57.67 | 52.11 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 13.33 | 48.78 |
| OQU92440 | Sorghum | plastid | 26.0 | 42.62 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | ProteinID:ABA81872 | ProteinID:ABA81872.1 | ProteinID:ABB29931 | ProteinID:ABB29931.1 |
| EMBL:DQ207864 | EMBL:DQ235174 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | UniProt:M1B8D3 | HAMAP:MF_03015 |
| PFAM:PF00318 | EnsemblPlantsGene:PGSC0003DMG400015271 | PGSC:PGSC0003DMG400015271 | EnsemblPlants:PGSC0003DMT400039497 | PRINTS:PR00395 | ScanProsite:PS00962 |
| ScanProsite:PS00963 | PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | InterPro:Ribosomal_S2 | InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk |
| InterPro:Ribosomal_S2_euk/arc | InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 | UniParc:UPI000295075D | SEG:seg |
Description
P40 [Source:PGSC_GENE;Acc:PGSC0003DMG400015271]
Coordinates
chr3:+:50303123..50305419
Molecular Weight (calculated)
32522.5 Da
IEP (calculated)
4.878
GRAVY (calculated)
-0.230
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAITQQPRT LTTKEADIQL MLAAEVHLGT KNCDFQMERY VFKRRNDGIY IINAGKTWDK LHMAARVIVS IENPQDIIVQ SARPYGQRAV LKFAQYTGAH
101: AIAGRHTPGT FTNQLQTSYS EPRLLILTDP RTDHQPIKEA ALGNIPTIAF CDTDSPMRYV DIGIPANNKG KHSIGVLFWI LARMVLQMRG TISAGPKWDV
201: MVDLFFYREP EEAKDQQEEE VPAIADYAEY GGAALGGDWT SSQIPDAQWA ADGATSVSVA TGGWSGEAVA DGGWDAAAAP PAPVGVPEVT PTPAPATGLE
101: AIAGRHTPGT FTNQLQTSYS EPRLLILTDP RTDHQPIKEA ALGNIPTIAF CDTDSPMRYV DIGIPANNKG KHSIGVLFWI LARMVLQMRG TISAGPKWDV
201: MVDLFFYREP EEAKDQQEEE VPAIADYAEY GGAALGGDWT SSQIPDAQWA ADGATSVSVA TGGWSGEAVA DGGWDAAAAP PAPVGVPEVT PTPAPATGLE
001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSADGGWE AAAPPSGAPA AGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSADGGWE AAAPPSGAPA AGWE
Arabidopsis Description
RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.