Factsheet for Zm00001d048253_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048256_P002	Maize	plasma membrane	96.75	96.75
Zm00001d027919_P001	Maize	plastid	91.88	91.29
Zm00001d048346_P001	Maize	plastid	88.96	88.39
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	85.39	86.23
TraesCS4D01G298000.1	Wheat	cytosol	83.44	83.44
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	83.44	83.44
TraesCS4A01G006000.1	Wheat	cytosol	78.25	80.33
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	76.3	76.55
Zm00001d027527_P001	Maize	mitochondrion	93.18	75.93
CDY55242	Canola	cytosol	58.12	72.47
Solyc06g072120.2.1	Tomato	nucleus	69.48	72.3
VIT_09s0002g00610.t01	Wine grape	cytosol	72.73	71.79
Solyc03g019780.2.1	Tomato	nucleus	68.83	71.14
CDY46144	Canola	cytosol	67.21	70.89
Bra032101.1-P	Field mustard	cytosol	67.21	70.89
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	68.51	70.57
CDY20307	Canola	cytosol	66.88	70.55
CDY03641	Canola	cytosol	67.53	70.51
CDX68268	Canola	cytosol, extracellular	65.91	70.49
CDY50642	Canola	cytosol	65.91	70.49
CDX82152	Canola	cytosol	67.53	70.27
Bra008030.1-P	Field mustard	cytosol	67.53	70.27
Bra003882.1-P	Field mustard	cytosol	65.26	69.79
CDX72910	Canola	cytosol	65.91	69.52
CDX96403	Canola	cytosol	65.58	69.18
PGSC0003DMT400039497	Potato	cytosol	67.21	69.0
AT1G72370.1	Thale cress	cytosol	66.23	68.46
Bra016062.1-P	Field mustard	cytosol	50.0	64.71
HORVU4Hr1G077240.1	Barley	cytosol	81.82	63.16
GSMUA_Achr5P22560_001	Banana	cytosol	14.94	56.1
AT3G04770.1	Thale cress	cytosol	59.09	54.82
CDY42439	Canola	cytosol	44.16	52.11
KRH66387	Soybean	peroxisome	10.39	49.23
KRG88565	Soybean	cytosol	13.64	47.19

Protein Annotations

EntrezGene:103639501	MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	ProteinID:AQL09207.1	GO:GO:0000028	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
UniProt:K7VGZ6	HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489
PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf
SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI000221EBD7	EnsemblPlantsGene:Zm00001d048253	EnsemblPlants:Zm00001d048253_P001	EnsemblPlants:Zm00001d048253_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein Sa-1

Coordinates

chr9:-:153255360..153257954

Molecular Weight (calculated)

33501.6 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.258

Length

308 amino acids

Sequence
(BLAST)

001: MAASAGGGAV RALSQKEQDI QMMLAADVHL GTKNCDFQME RYVFKRRTDG IYIINLGKTW DKLQLAARVI VAIENPQDII VQSARPYGQR AVLKFAQYTG
101: AHAIAGRHTP GTFTNQLQTS FSEPRLLILT DPRTDHQPIK ESALGNIPTI AFCDTDSPMR YVDIGIPANN KGRNSIGCLF WLLARMVLQM RGTILPGHKW
201: EVMVDLFFYR DPEEAKEQEE EAAAAPEFAA VTDYQGADQW GGDQWTSDVA APPVAPTGAD WGAAPAPVPT GDGWDQTVAP VPVDGTVPPV VAPTGWESAA
301: QPTAQGWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.