Factsheet for Zm00001d048256_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048253_P001	Maize	plastid	96.75	96.75
Zm00001d027919_P001	Maize	plastid	94.16	93.55
Zm00001d048346_P001	Maize	plastid	91.23	90.65
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	83.77	84.59
TraesCS4D01G298000.1	Wheat	cytosol	83.44	83.44
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	83.44	83.44
TraesCS4A01G006000.1	Wheat	cytosol	78.9	81.0
Zm00001d027527_P001	Maize	mitochondrion	95.78	78.04
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	76.62	76.87
Solyc06g072120.2.1	Tomato	nucleus	70.78	73.65
CDY55242	Canola	cytosol	58.12	72.47
Solyc03g019780.2.1	Tomato	nucleus	69.48	71.81
VIT_09s0002g00610.t01	Wine grape	cytosol	72.4	71.47
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	69.16	71.24
CDY46144	Canola	cytosol	67.53	71.23
Bra032101.1-P	Field mustard	cytosol	67.53	71.23
CDY20307	Canola	cytosol	67.21	70.89
CDY03641	Canola	cytosol	67.53	70.51
CDY50642	Canola	cytosol	65.91	70.49
CDX68268	Canola	cytosol, extracellular	65.91	70.49
CDX82152	Canola	cytosol	67.53	70.27
Bra008030.1-P	Field mustard	cytosol	67.53	70.27
Bra003882.1-P	Field mustard	cytosol	65.26	69.79
PGSC0003DMT400039497	Potato	cytosol	67.53	69.33
CDX72910	Canola	cytosol	65.58	69.18
CDX96403	Canola	cytosol	65.26	68.84
AT1G72370.1	Thale cress	cytosol	66.23	68.46
Bra016062.1-P	Field mustard	cytosol	49.68	64.29
HORVU4Hr1G077240.1	Barley	cytosol	81.82	63.16
GSMUA_Achr5P22560_001	Banana	cytosol	14.94	56.1
AT3G04770.1	Thale cress	cytosol	59.09	54.82
CDY42439	Canola	cytosol	43.83	51.72
KRH66387	Soybean	peroxisome	10.39	49.23
KRG88565	Soybean	cytosol	13.64	47.19

Protein Annotations

EntrezGene:100282918	MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	ProteinID:AQL09216.1	UniProt:B4G194	EMBL:BT043132
EMBL:EU962779	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395
ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk
InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI00017B801B	EnsemblPlantsGene:Zm00001d048256
EnsemblPlants:Zm00001d048256_P002	EnsemblPlants:Zm00001d048256_T002	SEG:seg	:	:	:

Description

40S ribosomal protein Sa-1

Coordinates

chr9:-:153315972..153318553

Molecular Weight (calculated)

33491.6 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.255

Length

308 amino acids

Sequence
(BLAST)

001: MAASAGGGAV RALSQKEQDI QMMLAADVHL GTKNCDFQME RYVFKRRTDG IYIINLGKTW DKLQLAARVI VAIENPQDII VQSARPYGQR AVLKFAQYTG
101: AHAIAGRHTP GTFTNQLQTS FSEPRLLILT DPRTDHQPIK ESALGNIPTI AFCDTDSPMR YVDIGIPANN KGRNSIGCLF WLLARMVLQM RGTILPGHKW
201: EVMVDLFFYR DPEEAKEQEE EAAAAPEFAA VTDYQGADQW GGDQWTSDVA APPVAPTGAD WGAAPASVPT GDGWDQTVAP VPVDGTVPPV VAPTGWESAA
301: QPTAQGWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.