CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G031720.2	Barley	cytosol	20.31	67.09
Os03t0402400-00	Rice	nucleus	40.61	56.99
CDY55242	Canola	cytosol	53.26	56.28
CDX68268	Canola	cytosol, extracellular	59.77	54.17
CDY50642	Canola	cytosol	59.77	54.17
CDX72910	Canola	cytosol	59.39	53.08
CDY03641	Canola	cytosol	59.77	52.88
CDX96403	Canola	cytosol	59.0	52.74
CDX82152	Canola	cytosol	59.39	52.36
AT1G72370.1	Thale cress	cytosol	59.39	52.01
CDY46144	Canola	cytosol	57.47	51.37
CDY20307	Canola	cytosol	57.09	51.03
TraesCS2D01G175700.1	Wheat	cytosol	55.94	48.03
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	55.94	48.03
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	55.94	48.03
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	52.87	46.78
KRH47681	Soybean	endoplasmic reticulum, nucleus	55.56	46.77
Solyc03g019780.2.1	Tomato	nucleus	53.26	46.64
GSMUA_Achr1P21820_001	Banana	cytosol	53.26	46.64
KRH06257	Soybean	nucleus	55.56	46.62
Solyc06g072120.2.1	Tomato	nucleus	52.87	46.62
PGSC0003DMT400039497	Potato	cytosol	53.26	46.33
TraesCS4A01G006000.1	Wheat	cytosol	53.26	46.33
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	52.87	46.15
VIT_09s0002g00610.t01	Wine grape	cytosol	55.17	46.15
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	54.02	45.93
KRH13835	Soybean	cytosol	54.41	45.66
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	53.26	45.57
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	52.49	44.48
TraesCS4D01G298000.1	Wheat	cytosol	52.49	44.48
Zm00001d048253_P001	Maize	plastid	52.11	44.16
Zm00001d048346_P001	Maize	plastid	52.11	43.87
Zm00001d048256_P002	Maize	plasma membrane	51.72	43.83
Zm00001d027919_P001	Maize	plastid	51.72	43.55
GSMUA_AchrUn_...	Banana	vacuole	52.11	40.0
KRH43602	Soybean	endoplasmic reticulum	54.41	37.47
Zm00001d027527_P001	Maize	mitochondrion	51.34	35.45
OQU92440	Sorghum	plastid	22.22	31.69
GSMUA_Achr5P22560_001	Banana	cytosol	6.51	20.73

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:A0A078HYN0	UniProt:A0A078HYN0	EnsemblPlants:CDY42439	ProteinID:CDY42439
ProteinID:CDY42439.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00074750001	PFAM:PF00318
PRINTS:PR00395	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf
SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI0004EEA284	SEG:seg	:	:

Description

BnaC02g22690DBnaC02g22690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYN0]

Coordinates

chrLK032524:-:210768..211983

Molecular Weight (calculated)

29697.5 Da

IEP (calculated)

7.936

GRAVY (calculated)

-0.113

Length

261 amino acids

Sequence
(BLAST)

001: MDEEYQVREC KYGSGHRRND GTYIFNLGNT WEKLQMAAQV IVAIENPLEI IMQSAKPYGQ RAILKFSRYT GANAIAGRHN PGIFTNQMQT SFSEPMLLIL
101: TDPRTGHQPI KEGALGNIRI IAFRDTDSPM RFVDIGIHAN NKGKQIIGCL FWLLARMVLQ MCGTIRLVHK WKVVVDLLLY REPEEAKPED EDEVGQTLDY
201: LLLNMVVETN GPLLRSLMLH GHEKPRCESL LLLPLLDGTI LVSLSLRHKQ HKTYILALCV F

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.