Factsheet for Os03t0402400-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
YLoc:	endoplasmic reticulum

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G031720.2	Barley	cytosol	31.18	73.42
CDY55242	Canola	cytosol	65.59	49.39
CDX68268	Canola	cytosol, extracellular	67.2	43.4
CDY50642	Canola	cytosol	67.2	43.4
Os07t0616600-02	Rice	nucleus	70.97	43.28
Solyc06g072120.2.1	Tomato	nucleus	68.82	43.24
Bra003882.1-P	Field mustard	cytosol	66.67	43.06
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	70.43	42.95
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	68.82	42.81
CDY20307	Canola	cytosol	67.2	42.81
CDY46144	Canola	cytosol	67.2	42.81
Bra032101.1-P	Field mustard	cytosol	67.2	42.81
KRH47681	Soybean	endoplasmic reticulum, nucleus	70.97	42.58
CDX96403	Canola	cytosol	66.67	42.47
CDX72910	Canola	cytosol	66.67	42.47
KRH06257	Soybean	nucleus	70.97	42.44
CDY03641	Canola	cytosol	67.2	42.37
CDX82152	Canola	cytosol	67.2	42.23
Bra008030.1-P	Field mustard	cytosol	67.2	42.23
Solyc03g019780.2.1	Tomato	nucleus	67.2	41.95
VIT_09s0002g00610.t01	Wine grape	cytosol	69.89	41.67
PGSC0003DMT400039497	Potato	cytosol	67.2	41.67
CDY42439	Canola	cytosol	56.99	40.61
KRH13835	Soybean	cytosol	67.74	40.51
AT3G04770.1	Thale cress	cytosol	65.05	36.45
Bra016062.1-P	Field mustard	cytosol	44.09	34.45
OQU92440	Sorghum	plastid	32.8	33.33
KRH43602	Soybean	endoplasmic reticulum	67.74	33.25

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A0P0VYK0	ProteinID:BAS84613.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015935	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0022626	GO:GO:0022627	GO:GO:0042788	EnsemblPlantsGene:Os03g0402400	EnsemblPlants:Os03t0402400-00	PFAM:PF00318
PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS
InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TMHMM:TMhelix	UniParc:UPI000393BC4E	SEG:seg

Description

Similar to Ribosome-associated protein p40-like. (Os03t0402400-00)

Coordinates

chr3:-:16384695..16386794

Molecular Weight (calculated)

21024.6 Da

IEP (calculated)

10.076

GRAVY (calculated)

-0.093

Length

186 amino acids

Sequence
(BLAST)

001: QEAILAYFPS GIFIINLGKT WEKLQLAARV IVAIENPQDI IVQSARPYGQ RAVLKFAQYT GAHAIAGRHT PGTFTNQLQT SFSEPRLLIL TDPRTDHQPI
101: KESALGNIPT IAFCDTDSPM RYVDIGIPAN KQGEPEHWLP LLGCLLGWFF RCVAQFSLGT SGMSWLIFSF IEIQRKLRSR RKRRLQ

Best Arabidopsis Sequence Match ( AT1G72370.2 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSADGGWE AAAPPSGAPA AGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.