CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06257	Soybean	nucleus	95.81	95.5
KRH13835	Soybean	cytosol	78.06	77.81
CDY55242	Canola	cytosol	61.94	77.73
HORVU6Hr1G031720.2	Barley	cytosol	19.68	77.22
VIT_09s0002g00610.t01	Wine grape	cytosol	75.48	75.0
CDY46144	Canola	cytosol	70.65	75.0
Bra032101.1-P	Field mustard	cytosol	70.65	75.0
CDY20307	Canola	cytosol	70.32	74.66
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	71.94	74.58
Solyc06g072120.2.1	Tomato	nucleus	70.65	73.99
CDX72910	Canola	cytosol	69.03	73.29
CDX96403	Canola	cytosol	69.03	73.29
Bra008030.1-P	Field mustard	cytosol	69.35	72.64
CDX68268	Canola	cytosol, extracellular	67.42	72.57
CDY50642	Canola	cytosol	67.42	72.57
CDY03641	Canola	cytosol	69.03	72.54
Solyc03g019780.2.1	Tomato	nucleus	69.68	72.48
CDX82152	Canola	cytosol	69.03	72.3
Bra003882.1-P	Field mustard	cytosol	66.77	71.88
PGSC0003DMT400039497	Potato	cytosol	69.03	71.33
AT1G72370.1	Thale cress	cytosol	68.39	71.14
Os03t0402400-00	Rice	nucleus	42.58	70.97
Bra016062.1-P	Field mustard	cytosol	52.26	68.07
KRH66387	Soybean	peroxisome	13.87	66.15
KRH43602	Soybean	endoplasmic reticulum	79.03	64.64
KRG88565	Soybean	cytosol	17.74	61.8
CDY42439	Canola	cytosol	46.77	55.56
OQU92440	Sorghum	plastid	27.1	45.9

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	EntrezGene:548014	UniProt:A0A0R0IZE4	EMBL:AF020553	EnsemblPlantsGene:GLYMA_07G043800
GO:GO:0000028	GO:GO:0000447	GO:GO:0000461	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006407	GO:GO:0006412	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	GO:GO:0030686	EnsemblPlants:KRH47681	ProteinID:KRH47681	ProteinID:KRH47681.1	HAMAP:MF_03015
UniProt:O22518	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15
InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313
TIGRFAMs:TIGR01012	UniParc:UPI0000135216	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:3624896..3627229

Molecular Weight (calculated)

33908.3 Da

IEP (calculated)

4.876

GRAVY (calculated)

-0.274

Length

310 amino acids

Sequence
(BLAST)

001: MATATNAAAA PPRQLSQKEA DIQMMLAADV HLGTKNCDFQ MERYIFKRRN DGIYIINLGK TWEKLQLAAR VIVAIENPQD IIVQSARPYG QRAVLKFAQY
101: TGAHAIAGRH TPGTFTNQLQ TSFSEPRLLI LTDPRTDHQP IKEAALGNIP TIAFCDTDSP MRYVDIGIPA NNKGKHSIGC LFWLLARMVL QMRGTIRPGL
201: KWDVMVDLFF YREPEEAKQQ EEEEAPAVDY AITDFNAGAI AADGQWPGTI DQSWSDAVPQ PIPAVPGVNW GAPAEAPAAA GGDWGEAVPP PQQIPVPPSG
301: IDTVQPSGWD

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.