Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46144 | Canola | cytosol | 91.5 | 77.4 |
| CDY20307 | Canola | cytosol | 91.09 | 77.05 |
| HORVU6Hr1G031720.2 | Barley | cytosol | 23.89 | 74.68 |
| CDY50642 | Canola | cytosol | 87.04 | 74.65 |
| CDX68268 | Canola | cytosol, extracellular | 86.64 | 74.31 |
| CDX72910 | Canola | cytosol | 85.43 | 72.26 |
| CDX96403 | Canola | cytosol | 85.02 | 71.92 |
| CDX82152 | Canola | cytosol | 85.83 | 71.62 |
| CDY03641 | Canola | cytosol | 85.43 | 71.53 |
| Os03t0402400-00 | Rice | nucleus | 49.39 | 65.59 |
| Solyc03g019780.2.1 | Tomato | nucleus | 76.11 | 63.09 |
| Solyc06g072120.2.1 | Tomato | nucleus | 74.9 | 62.5 |
| PGSC0003DMT400069333 | Potato | cytosol, mitochondrion | 75.3 | 62.21 |
| PGSC0003DMT400039497 | Potato | cytosol | 75.3 | 62.0 |
| KRH47681 | Soybean | endoplasmic reticulum, nucleus | 77.73 | 61.94 |
| KRH06257 | Soybean | nucleus | 77.73 | 61.74 |
| KRH13835 | Soybean | cytosol | 77.33 | 61.41 |
| TraesCS4A01G006000.1 | Wheat | cytosol | 74.49 | 61.33 |
| GSMUA_Achr1P21820_001 | Banana | cytosol | 73.68 | 61.07 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 74.9 | 60.86 |
| TraesCS2B01G194400.1 | Wheat | cytosol, golgi, unclear | 74.9 | 60.86 |
| TraesCS2D01G175700.1 | Wheat | cytosol | 74.9 | 60.86 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane | 71.66 | 60.0 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 74.49 | 59.93 |
| GSMUA_Achr8P30490_001 | Banana | cytosol, unclear | 72.87 | 59.02 |
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 73.28 | 58.77 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 73.28 | 58.77 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 74.09 | 58.65 |
| Zm00001d048253_P001 | Maize | plastid | 72.47 | 58.12 |
| Zm00001d048256_P002 | Maize | plasma membrane | 72.47 | 58.12 |
| Zm00001d027919_P001 | Maize | plastid | 72.06 | 57.42 |
| Zm00001d048346_P001 | Maize | plastid | 72.06 | 57.42 |
| CDY42439 | Canola | cytosol | 56.28 | 53.26 |
| GSMUA_AchrUn_... | Banana | vacuole | 70.04 | 50.88 |
| KRH43602 | Soybean | endoplasmic reticulum | 77.73 | 50.66 |
| Zm00001d027527_P001 | Maize | mitochondrion | 71.26 | 46.56 |
| OQU92440 | Sorghum | plastid | 29.55 | 39.89 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 9.31 | 28.05 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | GO:A0A078J0L6 | UniProt:A0A078J0L6 | EnsemblPlants:CDY55242 | ProteinID:CDY55242 |
| ProteinID:CDY55242.1 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00016587001 | HAMAP:MF_03015 | PFAM:PF00318 |
| PRINTS:PR00395 | ScanProsite:PS00963 | PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | InterPro:Ribosomal_S2 | InterPro:Ribosomal_S2_CS |
| InterPro:Ribosomal_S2_euk | InterPro:Ribosomal_S2_euk/arc | InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 | UniParc:UPI0004EC9409 |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g44920D40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A078J0L6]
Coordinates
chrLK033387:-:4153..5287
Molecular Weight (calculated)
27176.3 Da
IEP (calculated)
4.808
GRAVY (calculated)
-0.301
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MERYVYKRRN DGINILDLGK TLEKLYMAAR VIVAIENPQD IIVQSARPYG QRAVLKFAQY TGANAIAGRH TPGTFTNQMQ TSFSEPRLLI LTDPRTDHQP
101: IKEGALGNIP IIAFCDTDSP MRFVDIGIPA NNKGKHSIGC LFWILARMVL QMRGTIRPGQ KWDVMMDLFF YREPEEAKQL EDEEAAPQAD FAAPEYGVSG
201: GDQWTTAGIP DASWTGEAQQ PISAAPAADG WDTAVPPPAA VPAAGWD
101: IKEGALGNIP IIAFCDTDSP MRFVDIGIPA NNKGKHSIGC LFWILARMVL QMRGTIRPGQ KWDVMMDLFF YREPEEAKQL EDEEAAPQAD FAAPEYGVSG
201: GDQWTTAGIP DASWTGEAQQ PISAAPAADG WDTAVPPPAA VPAAGWD
001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
Arabidopsis Description
RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.