Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96403 | Canola | cytosol | 98.97 | 98.97 |
| CDX68268 | Canola | cytosol, extracellular | 93.15 | 94.44 |
| CDY50642 | Canola | cytosol | 92.81 | 94.1 |
| CDY03641 | Canola | cytosol | 93.15 | 92.2 |
| CDX82152 | Canola | cytosol | 93.15 | 91.89 |
| AT1G72370.1 | Thale cress | cytosol | 89.38 | 87.58 |
| CDY46144 | Canola | cytosol | 87.33 | 87.33 |
| CDY20307 | Canola | cytosol | 86.99 | 86.99 |
| CDY55242 | Canola | cytosol | 72.26 | 85.43 |
| HORVU6Hr1G031720.2 | Barley | cytosol | 20.89 | 77.22 |
| Solyc06g072120.2.1 | Tomato | nucleus | 72.95 | 71.96 |
| Solyc03g019780.2.1 | Tomato | nucleus | 73.29 | 71.81 |
| PGSC0003DMT400069333 | Potato | cytosol, mitochondrion | 72.95 | 71.24 |
| PGSC0003DMT400039497 | Potato | cytosol | 72.6 | 70.67 |
| TraesCS2D01G175700.1 | Wheat | cytosol | 72.6 | 69.74 |
| TraesCS2B01G194400.1 | Wheat | cytosol, golgi, unclear | 72.6 | 69.74 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 72.6 | 69.74 |
| KRH06257 | Soybean | nucleus | 73.97 | 69.45 |
| KRH47681 | Soybean | endoplasmic reticulum, nucleus | 73.29 | 69.03 |
| TraesCS4A01G006000.1 | Wheat | cytosol | 70.21 | 68.33 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 72.6 | 67.95 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 71.23 | 67.75 |
| KRH13835 | Soybean | cytosol | 71.92 | 67.52 |
| Os03t0402400-00 | Rice | nucleus | 42.47 | 66.67 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 69.86 | 66.23 |
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 69.86 | 66.23 |
| Zm00001d048253_P001 | Maize | plastid | 69.52 | 65.91 |
| Zm00001d048256_P002 | Maize | plasma membrane | 69.18 | 65.58 |
| GSMUA_Achr8P30490_001 | Banana | cytosol, unclear | 68.49 | 65.57 |
| Zm00001d048346_P001 | Maize | plastid | 69.52 | 65.48 |
| GSMUA_Achr1P21820_001 | Banana | cytosol | 66.78 | 65.44 |
| Zm00001d027919_P001 | Maize | plastid | 69.18 | 65.16 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane | 65.07 | 64.41 |
| CDY42439 | Canola | cytosol | 53.08 | 59.39 |
| KRH43602 | Soybean | endoplasmic reticulum | 72.6 | 55.94 |
| Zm00001d027527_P001 | Maize | mitochondrion | 68.84 | 53.17 |
| GSMUA_AchrUn_... | Banana | vacuole | 61.3 | 52.65 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 13.7 | 48.78 |
| OQU92440 | Sorghum | plastid | 25.34 | 40.44 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | GO:A0A078C7X9 | EnsemblPlants:CDX72910 | ProteinID:CDX72910 | ProteinID:CDX72910.1 |
| GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0022627 | EnsemblPlantsGene:GSBRNA2T00103331001 | HAMAP:MF_03015 | PFAM:PF00318 | PRINTS:PR00395 | ScanProsite:PS00962 |
| ScanProsite:PS00963 | PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | InterPro:Ribosomal_S2 | InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk |
| InterPro:Ribosomal_S2_euk/arc | InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 | UniParc:UPI0004EF28ED | SEG:seg |
Description
BnaC06g33580D
Coordinates
chrLK031797:-:1088020..1089643
Molecular Weight (calculated)
32002.0 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.299
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNGSAQLS QKEADIKMMC AAEVHLGTKN CNYQMERYVF KRRNDGIYIF NLGKTWEKLM MAARVIVAIE NPQDIIVQSA RPYGQRAVLK FAQYTGANAI
101: AGRHTPGTFT NQMQTSFSEP RLLILTDPRT DHQPIKEGAL GNIPIIAFCD TDSPMRFVDI GIPANNKGKH SIGCLFWLLA RMVLQMRGTI RPAQKWDVMV
201: DLFFYREPEE AKPEDEDEVA PQAEFGLPAP EYGGGDQWTT AAIPDAAWPG EAQAPISAAP AAGSWNDSAA PAAAEGGWDA AVPPTTAVTN WE
101: AGRHTPGTFT NQMQTSFSEP RLLILTDPRT DHQPIKEGAL GNIPIIAFCD TDSPMRFVDI GIPANNKGKH SIGCLFWLLA RMVLQMRGTI RPAQKWDVMV
201: DLFFYREPEE AKPEDEDEVA PQAEFGLPAP EYGGGDQWTT AAIPDAAWPG EAQAPISAAP AAGSWNDSAA PAAAEGGWDA AVPPTTAVTN WE
001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
Arabidopsis Description
RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.