Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03641 | Canola | cytosol | 89.6 | 90.51 |
| CDX68268 | Canola | cytosol, extracellular | 86.58 | 89.58 |
| CDX72910 | Canola | cytosol | 87.58 | 89.38 |
| CDX96403 | Canola | cytosol | 87.58 | 89.38 |
| Bra003882.1-P | Field mustard | cytosol | 86.24 | 89.24 |
| CDY50642 | Canola | cytosol | 86.24 | 89.24 |
| Bra008030.1-P | Field mustard | cytosol | 88.59 | 89.19 |
| CDX82152 | Canola | cytosol | 88.25 | 88.85 |
| Bra016062.1-P | Field mustard | cytosol | 70.13 | 87.82 |
| TraesCS2D01G175700.1 | Wheat | cytosol | 71.14 | 69.74 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 71.14 | 69.74 |
| TraesCS2B01G194400.1 | Wheat | cytosol, golgi, unclear | 70.81 | 69.41 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 72.15 | 68.91 |
| KRH06257 | Soybean | nucleus | 71.81 | 68.81 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 70.47 | 68.4 |
| KRH47681 | Soybean | endoplasmic reticulum, nucleus | 71.14 | 68.39 |
| TraesCS4A01G006000.1 | Wheat | cytosol | 68.79 | 68.33 |
| KRH13835 | Soybean | cytosol | 70.81 | 67.85 |
| Zm00001d048256_P002 | Maize | plasma membrane | 68.46 | 66.23 |
| Zm00001d048253_P001 | Maize | plastid | 68.46 | 66.23 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 68.46 | 66.23 |
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 68.46 | 66.23 |
| Zm00001d048346_P001 | Maize | plastid | 68.79 | 66.13 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane | 65.44 | 66.1 |
| GSMUA_Achr8P30490_001 | Banana | cytosol, unclear | 67.45 | 65.9 |
| Zm00001d027919_P001 | Maize | plastid | 68.12 | 65.48 |
| GSMUA_Achr1P21820_001 | Banana | cytosol | 65.44 | 65.44 |
| CDY42439 | Canola | cytosol | 52.01 | 59.39 |
| KRH43602 | Soybean | endoplasmic reticulum | 71.48 | 56.2 |
| AT3G04770.1 | Thale cress | cytosol | 61.41 | 55.12 |
| Zm00001d027527_P001 | Maize | mitochondrion | 68.12 | 53.7 |
| GSMUA_AchrUn_... | Banana | vacuole | 60.07 | 52.65 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 13.76 | 50.0 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | EntrezGene:843569 | UniProt:A0A178WNA1 | ProteinID:AAG52587.1 | ProteinID:AEE35313.1 |
| ProteinID:AEE35314.1 | EMBL:AK316989 | ArrayExpress:AT1G72370 | EnsemblPlantsGene:AT1G72370 | RefSeq:AT1G72370 | TAIR:AT1G72370 |
| RefSeq:AT1G72370-TAIR-G | EnsemblPlants:AT1G72370.1 | TAIR:AT1G72370.1 | EMBL:AY054211 | EMBL:AY058885 | EMBL:AY065096 |
| EMBL:AY079041 | EMBL:AY087976 | EMBL:AY114561 | EMBL:AY136324 | Unigene:At.22576 | EMBL:BT000421 |
| ProteinID:CAA61547.1 | ProteinID:CAA71407.1 | GO:GO:0000028 | GO:GO:0000447 | GO:GO:0000461 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006407 | GO:GO:0006412 | GO:GO:0006810 |
| GO:GO:0006950 | GO:GO:0006970 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0015935 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030529 |
| GO:GO:0030686 | GO:GO:0042788 | HAMAP:MF_03015 | RefSeq:NP_001031267.1 | RefSeq:NP_177381.1 | ProteinID:OAP19777.1 |
| Symbol:P40 | PFAM:PF00318 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00395 |
| ScanProsite:PS00962 | ScanProsite:PS00963 | PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | UniProt:Q08682 | InterPro:Ribosomal_S2 |
| InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk | InterPro:Ribosomal_S2_euk/arc | InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 |
| EMBL:U01955 | UniParc:UPI0000001137 | EMBL:X69056 | SEG:seg | : | : |
Description
RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
Coordinates
chr1:-:27242845..27244931
Molecular Weight (calculated)
32293.2 Da
IEP (calculated)
4.776
GRAVY (calculated)
-0.316
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.