Factsheet for Bra016062.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96403	Canola	cytosol	97.48	79.45
Bra003882.1-P	Field mustard	cytosol	91.6	75.69
Bra008030.1-P	Field mustard	cytosol	92.02	73.99
AT1G72370.1	Thale cress	cytosol	87.82	70.13
Bra032101.1-P	Field mustard	cytosol	84.87	69.18
Solyc03g019780.2.1	Tomato	nucleus	69.75	55.7
Solyc06g072120.2.1	Tomato	nucleus	68.07	54.73
PGSC0003DMT400039497	Potato	cytosol	68.91	54.67
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	68.07	54.18
TraesCS2D01G175700.1	Wheat	cytosol	67.65	52.96
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	67.65	52.96
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	67.65	52.96
KRH06257	Soybean	nucleus	68.91	52.73
VIT_09s0002g00610.t01	Wine grape	cytosol	68.91	52.56
KRH47681	Soybean	endoplasmic reticulum, nucleus	68.07	52.26
KRH13835	Soybean	cytosol	68.07	52.09
GSMUA_Achr1P21820_001	Banana	cytosol	64.71	51.68
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	66.39	51.47
TraesCS4A01G006000.1	Wheat	cytosol	64.71	51.33
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	64.29	50.16
Zm00001d048253_P001	Maize	plastid	64.71	50.0
Zm00001d048346_P001	Maize	plastid	64.71	49.68
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	64.29	49.68
TraesCS4D01G298000.1	Wheat	cytosol	64.29	49.68
Zm00001d048256_P002	Maize	plasma membrane	64.29	49.68
Zm00001d027919_P001	Maize	plastid	64.29	49.35
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	59.66	48.14
Os03t0402400-00	Rice	nucleus	34.45	44.09
KRH43602	Soybean	endoplasmic reticulum	68.91	43.27
HORVU6Hr1G031720.2	Barley	cytosol	14.29	43.04
GSMUA_AchrUn_...	Banana	vacuole	57.98	40.59
GSMUA_Achr5P22560_001	Banana	cytosol	13.87	40.24
Zm00001d027527_P001	Maize	mitochondrion	63.87	40.21
OQU92440	Sorghum	plastid	17.65	22.95

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	EnsemblPlantsGene:Bra016062	EnsemblPlants:Bra016062.1	EnsemblPlants:Bra016062.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	UniProt:M4DHT5	PFAM:PF00318	PRINTS:PR00395	PANTHER:PTHR11489
PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	UniParc:UPI0002541BDF
SEG:seg	:	:	:	:	:

Description

AT1G72370 (E=3e-055) P40, AP40, RP40, RPSAA | P40; structural constituent of ribosome

Coordinates

chrA07:-:19601292..19602501

Molecular Weight (calculated)

26080.1 Da

IEP (calculated)

4.466

GRAVY (calculated)

-0.172

Length

238 amino acids

Sequence
(BLAST)

001: MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLMMAARVIV AIENPQDIIV QSARPYGQRA VPLLEGTLLP IKEGALGNIP IIAFCDTDSP
101: MRFVDIGIPA NNKGKHSIGC LFWLLARMVL QMRGTIRPAQ KWDVMVDLFF YREPEETKPE DEDEVAPQAE FGLPAPEYGG GDQWTTAAIP DAAWPGEAQA
201: PISAAPAAGS WNDSAAPAAA EGGWDAAVPP TTAVTNWE

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.