Factsheet for HORVU6Hr1G031720.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0402400-00	Rice	nucleus	73.42	31.18
OQU92440	Sorghum	plastid	63.29	27.32
CDY55242	Canola	cytosol	74.68	23.89
Bra003882.1-P	Field mustard	cytosol	78.48	21.53
CDX68268	Canola	cytosol, extracellular	78.48	21.53
CDY50642	Canola	cytosol	78.48	21.53
Bra032101.1-P	Field mustard	cytosol	78.48	21.23
CDY46144	Canola	cytosol	78.48	21.23
CDY20307	Canola	cytosol	78.48	21.23
CDY03641	Canola	cytosol	78.48	21.02
CDX82152	Canola	cytosol	78.48	20.95
Bra008030.1-P	Field mustard	cytosol	78.48	20.95
CDX96403	Canola	cytosol	77.22	20.89
CDX72910	Canola	cytosol	77.22	20.89
CDY42439	Canola	cytosol	67.09	20.31
KRH47681	Soybean	endoplasmic reticulum, nucleus	77.22	19.68
KRH06257	Soybean	nucleus	77.22	19.61
Solyc06g072120.2.1	Tomato	nucleus	73.42	19.59
VIT_09s0002g00610.t01	Wine grape	cytosol	77.22	19.55
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	73.42	19.4
KRH13835	Soybean	cytosol	73.42	18.65
Solyc03g019780.2.1	Tomato	nucleus	69.62	18.46
PGSC0003DMT400039497	Potato	cytosol	69.62	18.33
AT3G04770.1	Thale cress	cytosol	75.95	18.07
HORVU4Hr1G077240.1	Barley	cytosol	81.01	16.04
KRH43602	Soybean	endoplasmic reticulum	73.42	15.3
Bra016062.1-P	Field mustard	cytosol	43.04	14.29
HORVU7Hr1G091190.1	Barley	cytosol	0.0	0.0
HORVU6Hr1G050840.1	Barley	cytosol	0.0	0.0
HORVU6Hr1G022460.1	Barley	cytosol	0.0	0.0

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A287TTA5	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
EnsemblPlantsGene:HORVU6Hr1G031720	EnsemblPlants:HORVU6Hr1G031720.2	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf
SUPFAM:SSF52313	UniParc:UPI000B463434	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:136210396..136210632

Molecular Weight (calculated)

8893.7 Da

IEP (calculated)

10.618

GRAVY (calculated)

-0.094

Length

79 amino acids

Sequence
(BLAST)

1: ASTSSTWAKT WEKLQLMARV IVAIENLHDI IVQFARPYGQ RAVLKFTQHT GANAIAGRHT PGTFTNQMHT SFSEPIWLL

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.