CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43602	Soybean	endoplasmic reticulum	97.11	79.68
KRH47681	Soybean	endoplasmic reticulum, nucleus	77.81	78.06
KRH06257	Soybean	nucleus	77.49	77.49
CDY55242	Canola	cytosol	61.41	77.33
Bra032101.1-P	Field mustard	cytosol	69.45	73.97
CDY46144	Canola	cytosol	69.45	73.97
CDY20307	Canola	cytosol	69.13	73.63
HORVU6Hr1G031720.2	Barley	cytosol	18.65	73.42
CDX72910	Canola	cytosol	67.52	71.92
CDX96403	Canola	cytosol	67.52	71.92
CDX68268	Canola	cytosol, extracellular	66.24	71.53
CDY50642	Canola	cytosol	66.24	71.53
Bra008030.1-P	Field mustard	cytosol	67.52	70.95
Solyc06g072120.2.1	Tomato	nucleus	67.52	70.95
CDX82152	Canola	cytosol	67.52	70.95
CDY03641	Canola	cytosol	67.2	70.85
AT1G72370.1	Thale cress	cytosol	67.85	70.81
Bra003882.1-P	Field mustard	cytosol	65.27	70.49
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	67.52	70.23
VIT_09s0002g00610.t01	Wine grape	cytosol	70.42	70.19
Solyc03g019780.2.1	Tomato	nucleus	65.92	68.79
PGSC0003DMT400039497	Potato	cytosol	66.24	68.67
Bra016062.1-P	Field mustard	cytosol	52.09	68.07
Os03t0402400-00	Rice	nucleus	40.51	67.74
CDY42439	Canola	cytosol	45.66	54.41
KRH66387	Soybean	peroxisome	11.25	53.85
KRG88565	Soybean	cytosol	13.5	47.19
OQU92440	Sorghum	plastid	25.4	43.17

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A0R4J5B7	EMBL:ACUP02009793	EnsemblPlantsGene:GLYMA_15G267100	GO:GO:0000028
GO:GO:0000447	GO:GO:0000461	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006407	GO:GO:0006412	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
GO:GO:0030686	EnsemblPlants:KRH13835	ProteinID:KRH13835	ProteinID:KRH13835.1	HAMAP:MF_03015	PFAM:PF00318
PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS
InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI000189D1F7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:50345110..50347801

Molecular Weight (calculated)

34101.3 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.358

Length

311 amino acids

Sequence
(BLAST)

001: MAAADSSAAP SHQLSQRETD IQMMLAADVH LGTKNCDFQM ERYVFKRRTD GIYIINLGKT WEKLQLAARI IVAIENPQDI IVQSARPYGQ RAVLKFAQYT
101: GAHAIAGRHT PGTFTNQMQQ SYNEPRLLIL TDPRTDHQPI KEGALGNIPT IAFCDTDSPM RYVDVGIPAN NKGKHSIGCL FWLLARMVLQ MRGTIRPGHK
201: WDVMVDLFFY REPEEAKQQE EDEAPPAQDY AISDFNAAGI GSFPASDGQW PAAVEQPWTE EAPQPISAAP TNLTPEAAVA GDWGEAVPAP VPAPQAGVPP
301: AQAFPPATGW D

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.