Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008030.1-P | Field mustard | cytosol | 98.99 | 98.99 |
| CDY03641 | Canola | cytosol | 97.97 | 98.31 |
| CDY50642 | Canola | cytosol | 91.89 | 94.44 |
| CDX68268 | Canola | cytosol, extracellular | 91.55 | 94.1 |
| CDX72910 | Canola | cytosol | 91.89 | 93.15 |
| CDX96403 | Canola | cytosol | 91.55 | 92.81 |
| AT1G72370.1 | Thale cress | cytosol | 88.85 | 88.25 |
| CDY46144 | Canola | cytosol | 86.82 | 88.01 |
| CDY20307 | Canola | cytosol | 86.49 | 87.67 |
| CDY55242 | Canola | cytosol | 71.62 | 85.83 |
| HORVU6Hr1G031720.2 | Barley | cytosol | 20.95 | 78.48 |
| Solyc06g072120.2.1 | Tomato | nucleus | 70.95 | 70.95 |
| Solyc03g019780.2.1 | Tomato | nucleus | 71.28 | 70.81 |
| TraesCS2B01G194400.1 | Wheat | cytosol, golgi, unclear | 72.3 | 70.39 |
| PGSC0003DMT400069333 | Potato | cytosol, mitochondrion | 70.95 | 70.23 |
| TraesCS2D01G175700.1 | Wheat | cytosol | 71.96 | 70.07 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 71.96 | 70.07 |
| KRH06257 | Soybean | nucleus | 72.97 | 69.45 |
| PGSC0003DMT400039497 | Potato | cytosol | 70.27 | 69.33 |
| TraesCS4A01G006000.1 | Wheat | cytosol | 70.27 | 69.33 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 71.62 | 69.06 |
| KRH47681 | Soybean | endoplasmic reticulum, nucleus | 72.3 | 69.03 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 72.64 | 68.91 |
| GSMUA_Achr8P30490_001 | Banana | cytosol, unclear | 69.59 | 67.54 |
| Zm00001d048256_P002 | Maize | plasma membrane | 70.27 | 67.53 |
| Zm00001d048253_P001 | Maize | plastid | 70.27 | 67.53 |
| KRH13835 | Soybean | cytosol | 70.95 | 67.52 |
| Os03t0402400-00 | Rice | nucleus | 42.23 | 67.2 |
| Zm00001d048346_P001 | Maize | plastid | 70.27 | 67.1 |
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 69.26 | 66.56 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 69.26 | 66.56 |
| Zm00001d027919_P001 | Maize | plastid | 69.59 | 66.45 |
| GSMUA_Achr1P21820_001 | Banana | cytosol | 66.89 | 66.44 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane | 66.22 | 66.44 |
| CDY42439 | Canola | cytosol | 52.36 | 59.39 |
| KRH43602 | Soybean | endoplasmic reticulum | 71.28 | 55.67 |
| Zm00001d027527_P001 | Maize | mitochondrion | 69.59 | 54.5 |
| GSMUA_AchrUn_... | Banana | vacuole | 61.15 | 53.24 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 14.53 | 52.44 |
| OQU92440 | Sorghum | plastid | 25.0 | 40.44 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | GO:A0A078CZ98 | EnsemblPlants:CDX82152 | ProteinID:CDX82152 | ProteinID:CDX82152.1 |
| GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0022627 | EnsemblPlantsGene:GSBRNA2T00137209001 | HAMAP:MF_03015 | PFAM:PF00318 | PRINTS:PR00395 | ScanProsite:PS00962 |
| ScanProsite:PS00963 | PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | InterPro:Ribosomal_S2 | InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk |
| InterPro:Ribosomal_S2_euk/arc | InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 | UniParc:UPI000189D1E6 | SEG:seg |
Description
BnaC02g21380D
Coordinates
chrLK031827:+:1263054..1264958
Molecular Weight (calculated)
32269.3 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.310
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNGSATTG QLSQKEADIK MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIRPAQKWD
201: VMVDLFFYRE PEEAKPDDED EVAPQAEFGL PAPEYGGGDQ WTTAAIPDAA WPGEAQAPIA AAPAGASWNE SGAVPAAEGG WDTAVPPTNA AVGGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIRPAQKWD
201: VMVDLFFYRE PEEAKPDDED EVAPQAEFGL PAPEYGGGDQ WTTAAIPDAA WPGEAQAPIA AAPAGASWNE SGAVPAAEGG WDTAVPPTNA AVGGWE
001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
Arabidopsis Description
RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.