Factsheet for TraesCS4B01G299100.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, unclear, cytosol, golgi, nucleus

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, golgi, nucleus, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
golgi: 25769308
unclear: 25769308
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G298000.1	Wheat	cytosol	100.0	100.0
TraesCS4A01G006000.1	Wheat	cytosol	86.36	88.67
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	83.44	84.26
Zm00001d048346_P001	Maize	plastid	84.74	84.19
Zm00001d027919_P001	Maize	plastid	84.09	83.55
Zm00001d048256_P002	Maize	plasma membrane	83.44	83.44
Zm00001d048253_P001	Maize	plastid	83.44	83.44
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	75.65	76.64
Solyc06g072120.2.1	Tomato	nucleus	71.43	74.32
CDY55242	Canola	cytosol	58.77	73.28
HORVU4Hr1G077240.1	Barley	cytosol	94.81	73.18
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	70.45	72.58
CDY46144	Canola	cytosol	68.18	71.92
Bra032101.1-P	Field mustard	cytosol	68.18	71.92
VIT_09s0002g00610.t01	Wine grape	cytosol	72.73	71.79
CDY20307	Canola	cytosol	67.86	71.58
Solyc03g019780.2.1	Tomato	nucleus	68.51	70.81
CDX68268	Canola	cytosol, extracellular	65.58	70.14
CDX72910	Canola	cytosol	66.23	69.86
CDY50642	Canola	cytosol	65.26	69.79
CDX96403	Canola	cytosol	65.91	69.52
Bra008030.1-P	Field mustard	cytosol	66.56	69.26
CDX82152	Canola	cytosol	66.56	69.26
CDY03641	Canola	cytosol	66.23	69.15
Bra003882.1-P	Field mustard	cytosol	64.61	69.1
PGSC0003DMT400039497	Potato	cytosol	67.21	69.0
AT1G72370.1	Thale cress	cytosol	66.23	68.46
Zm00001d027527_P001	Maize	mitochondrion	83.77	68.25
Bra016062.1-P	Field mustard	cytosol	49.68	64.29
GSMUA_Achr5P22560_001	Banana	cytosol	15.58	58.54
AT3G04770.1	Thale cress	cytosol	57.79	53.61
CDY42439	Canola	cytosol	44.48	52.49
KRH66387	Soybean	peroxisome	10.06	47.69
KRG88565	Soybean	cytosol	12.99	44.94

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	HAMAP:MF_03015
PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2
InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012
EnsemblPlantsGene:TraesCS4B01G299100	EnsemblPlants:TraesCS4B01G299100.1	TIGR:cd01425	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:-:585463331..585465135

Molecular Weight (calculated)

33272.3 Da

IEP (calculated)

4.632

GRAVY (calculated)

-0.281

Length

308 amino acids

Sequence
(BLAST)

001: MAAAAGEAPR ALSQKEQDIQ MMLAADVHLG TKNCDFQMER YAYKRRSDGI YIINLGKTWE KLQLAARVIV AIENPQDIIV QSARPYGQRA VLKFAQHTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE SALGNIPTIA FCDTDSPMRY VDIGIPANNK GRNSIGCLYW LLARMVLQMR GTILPGHKWD
201: VMVDLFFYRD PEEAKEQEDE AAGAPEYAAI TDYGAAAGQW GGDQWTSDAP APPPVTGGEW PMAEAPVAGG DGWDAAGAPV AVEGAVPAPV VAATGWDAAV
301: QPPAQGWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.