Factsheet for Zm00001d027919_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048256_P002	Maize	plasma membrane	93.55	94.16
Zm00001d048253_P001	Maize	plastid	91.29	91.88
Zm00001d048346_P001	Maize	plastid	90.32	90.32
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	83.87	85.25
TraesCS4D01G298000.1	Wheat	cytosol	83.55	84.09
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	83.55	84.09
TraesCS4A01G006000.1	Wheat	cytosol	79.03	81.67
Zm00001d027527_P001	Maize	mitochondrion	93.87	76.98
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	74.52	75.24
Solyc06g072120.2.1	Tomato	nucleus	70.32	73.65
CDY55242	Canola	cytosol	57.42	72.06
VIT_09s0002g00610.t01	Wine grape	cytosol	71.61	71.15
Solyc03g019780.2.1	Tomato	nucleus	68.39	71.14
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	68.39	70.9
CDY46144	Canola	cytosol	66.77	70.89
Bra032101.1-P	Field mustard	cytosol	66.77	70.89
CDY20307	Canola	cytosol	66.45	70.55
CDY03641	Canola	cytosol	66.77	70.17
CDX68268	Canola	cytosol, extracellular	65.16	70.14
CDY50642	Canola	cytosol	65.16	70.14
CDX82152	Canola	cytosol	66.45	69.59
Bra008030.1-P	Field mustard	cytosol	66.45	69.59
Bra003882.1-P	Field mustard	cytosol	64.52	69.44
CDX72910	Canola	cytosol	65.16	69.18
PGSC0003DMT400039497	Potato	cytosol	66.77	69.0
CDX96403	Canola	cytosol	64.84	68.84
AT1G72370.1	Thale cress	cytosol	65.48	68.12
Bra016062.1-P	Field mustard	cytosol	49.35	64.29
HORVU4Hr1G077240.1	Barley	cytosol	81.94	63.66
GSMUA_Achr5P22560_001	Banana	cytosol	15.16	57.32
AT3G04770.1	Thale cress	cytosol	58.39	54.52
CDY42439	Canola	cytosol	43.55	51.72
KRH66387	Soybean	peroxisome	10.65	50.77
KRG88565	Soybean	cytosol	13.87	48.31

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A1D6JQM8	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	HAMAP:MF_03015
ProteinID:ONL94285.1	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15
InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313
TIGRFAMs:TIGR01012	UniParc:UPI000221653F	EnsemblPlantsGene:Zm00001d027919	EnsemblPlants:Zm00001d027919_P001	EnsemblPlants:Zm00001d027919_T001	SEG:seg

Description

40S ribosomal protein Sa-1

Coordinates

chr1:-:17615562..17626036

Molecular Weight (calculated)

33727.0 Da

IEP (calculated)

4.695

GRAVY (calculated)

-0.235

Length

310 amino acids

Sequence
(BLAST)

001: MAAAAAVGGA VRPLSQKEQD IQMMLAADVH LGTKNCDFQM ERYVFKRRTD GIYIINLGKT WEKLQLAARV IVAIENPQDM IVQSARPYGQ RAVLKFAQYT
101: GAHAIAGRHT PGTFTNQLQT SFSEPRLLIL TDPRTDHQPI KESALGNIPT IAFCDTDSPM RYVDIGIPAN NKGRNSIGCL FWLLARMVLQ MRGTILPGHK
201: WEVMVDLFFY RDPEEAKEQE EEAAVAPEFA AITDYQGADQ WVGGDQWTAD VAAPSVAPTG AEWGAAPAPV PTGDGWDQTG APVPADGAVP PVIAPTGWDQ
301: AAQPTAQGWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.